View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_high_12 (Length: 325)
Name: NF16774_high_12
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 13800531 - 13800808
Alignment:
| Q |
1 |
gagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttccttcccggaattgacaaagggatgcgtaacaacaaatttcttagattga |
100 |
Q |
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| T |
13800531 |
gagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttccttcccggaattgacaaagggatgcgtaacaacaaatttcttagattga |
13800630 |
T |
|
| Q |
101 |
ttttattgccaaattcgattttggtgttgtcaatggatttgatgttggactcagattcgtcgctggattcgattgttgcaaaacttgaattcttcgc--- |
197 |
Q |
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| T |
13800631 |
ttttattgccgaattcgattttggtgttgtcaatggatttgatgttggactcagattcgtcgctggattcgattgttgcaaaacttgaattcgtcgctgg |
13800730 |
T |
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| Q |
198 |
tggtgtgctggtggttttcatttattag--nnnnnnnnncttttctgaaactgattggattgattgttgttgtttttc |
273 |
Q |
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| T |
13800731 |
tggtgtgctggtggttttcatttgttagtttttttttttcttttctgaaactgattggattgattgttgttgcttttc |
13800808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 25570268 - 25570565
Alignment:
| Q |
1 |
gagacaattacaaacgacacacataaattaatcaaggtgaaacctctcttccttcccggaattgacaaagggatgcgtaacaacaaatttcttagattga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25570268 |
gagacaattacaaacgacacacataaattaattaaggtgaaacctctcttccttcccggaattgacaaagggatgcgtaacaacaaatttcttagattga |
25570367 |
T |
|
| Q |
101 |
ttttattgccaaattcgattttggtgttgtcaatggatttgatgttggactcagattcgtcgctggattcgattgttgcaaaacttgaattcttcgc--- |
197 |
Q |
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| T |
25570368 |
ttttattgccgaattcgat------------------tttgatgttggactcagattcgtcgctggattcgattgttgcaaaacttgaattcgtcgctgg |
25570449 |
T |
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| Q |
198 |
tggtgtgctggtggttttcatttattagnnnnnnnnncttttctgaaactgattggattgattgttgttgtttttccaggcctggatctttgattgagga |
297 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
25570450 |
tggtgtgctggtggttttcatttgttagtttttttttcttttctgaaactgattggattgattgttgttgtttttccaggcctagatctttg-ttgagga |
25570548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 52767519 - 52767467
Alignment:
| Q |
2 |
agacaattacaaacgacacacataaattaatcaaggtgaaacctctcttcctt |
54 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
52767519 |
agacaattacaaacgacacacagaaattaatcaaggtgcaacctctcttcctt |
52767467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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