View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_high_13 (Length: 318)
Name: NF16774_high_13
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 303
Target Start/End: Complemental strand, 38313079 - 38312780
Alignment:
| Q |
3 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctc |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38313079 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctg |
38312980 |
T |
|
| Q |
103 |
attcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaagcaagatgcgaggttcctaattcccgccaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312979 |
attcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaagcaagatgcgaggttcctaattcccgccaac |
38312880 |
T |
|
| Q |
203 |
tcnnnnnnnntcaaagggaaaatcatgtgcgagaattgtagcagcacacataggcactaactctgattcaatttgatctaccccgctatcagattcgaca |
302 |
Q |
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| T |
38312879 |
tc-aaaaaaatcaaagggaaaatcatgtgcgagaattgtagcagcacacataggcactaactctgattcaatttgatctaccccgctatcagattcgaca |
38312781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 38316488 - 38316323
Alignment:
| Q |
3 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctc |
102 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||| |
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| T |
38316488 |
aatataagtctcagtggtgttagattcccacaaatcaaaagttaaagatatcctatt----aggaatgctagccaattcttgtttaagctttagtttctc |
38316393 |
T |
|
| Q |
103 |
attcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
172 |
Q |
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||||||||||||| || ||||||||||||| |||||||| ||||| |||||| |||||||||||||| |
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| T |
38316392 |
tttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggtataacagcatttggatttaag |
38316323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 38305759 - 38305595
Alignment:
| Q |
4 |
atataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctca |
103 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
38305759 |
atataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctatt----aggaatggtagccaattcttgtttaagcttcagtttctct |
38305664 |
T |
|
| Q |
104 |
ttcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
172 |
Q |
| |
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||| |||| ||||| |||||||||||||||| ||||| | |||||||| ||||| ||||||||||||| |
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| T |
38305663 |
ttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaacaatatttggatttaag |
38305595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 38320586 - 38320421
Alignment:
| Q |
3 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctc |
102 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||| || || ||||||||||||||| | |
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| T |
38320586 |
aatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctatt----aggaatggtagccaaatcctgtttaagcttgagtttcgc |
38320491 |
T |
|
| Q |
103 |
attcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
172 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38320490 |
tttcgtgtacaaatccgagacataagccttaataacatttataggaggcataacagcatttggatttaag |
38320421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 38325312 - 38325169
Alignment:
| Q |
24 |
agattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctcattcgtgtacaaatcggagac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||| |||||| ||| ||||||||| | ||| |
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| T |
38325312 |
agattcccacaaatcaaaagttaaagataccctatt----aggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgac |
38325217 |
T |
|
| Q |
124 |
ataagcctcaagaacatttgaaggaggcataacaacatttggatttaa |
171 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| ||||| ||||||| |
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| T |
38325216 |
ataagcctcaataacatttgtaggaggtataacagcatttcgatttaa |
38325169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 38299840 - 38299731
Alignment:
| Q |
4 |
atataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctca |
103 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||| | ||| |||| ||||||||||| |
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| T |
38299840 |
atataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcc----tattaggaatagtagccagctgttgtttaatattgagtttctct |
38299745 |
T |
|
| Q |
104 |
ttcgtgtacaaatc |
117 |
Q |
| |
|
| ||||||||||| |
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| T |
38299744 |
tcagtgtacaaatc |
38299731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 38308493 - 38308385
Alignment:
| Q |
3 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctc |
102 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||| |||||||||||| |||| |||||||||||||| || ||| || ||||| ||||||| |
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| T |
38308493 |
aatataagtgccagtagtacaagattcccacaactcaaaggttaaagatatc----ttataaggaatggtagccagttgttgtttgagcttatgtttctc |
38308398 |
T |
|
| Q |
103 |
attcgtgtacaaa |
115 |
Q |
| |
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| |||||||||| |
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|
| T |
38308397 |
ttccgtgtacaaa |
38308385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 38850857 - 38851022
Alignment:
| Q |
3 |
aatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctc |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||| |||||||| ||||||| |
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| T |
38850857 |
aatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcc----tattaggaatggtagttaattgttgtttaagcttaggtttctc |
38850952 |
T |
|
| Q |
103 |
attcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaacatttggatttaag |
172 |
Q |
| |
|
||||||||||||| || || ||||| || | ||||||| |||||| ||| || ||||||||||||| |
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|
| T |
38850953 |
tttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtataggaatatttggatttaag |
38851022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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