View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_high_20 (Length: 223)
Name: NF16774_high_20
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_high_20 |
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| [»] chr6 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 13800342 - 13800545
Alignment:
| Q |
20 |
aaacacatcaaatcctaaaatcttaaacacatcaacaacaccttttttaaccttcatnnnnnnngcccaaagaaaataaagctaatccaccatgttccca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
13800342 |
aaacacatcaaatcctaaaatcttaaacacatcaacaaaaccttctttaaccttcataaaaaaagcccatagaaaataaagctaatccaccatgttccca |
13800441 |
T |
|
| Q |
120 |
aattaagaatacacaaaacccttggtttcaccgttgaaattgattattatagcagtaaggaattattgttaaggaacgaggagatcatggagacaattac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13800442 |
aattaagaatacacaaaacccttggtttcaccgttgaaattgattattatagcagtaaggaattattgctaaggaacgaggagatcatggagacaattac |
13800541 |
T |
|
| Q |
220 |
aaac |
223 |
Q |
| |
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|||| |
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| T |
13800542 |
aaac |
13800545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 27439051 - 27439111
Alignment:
| Q |
10 |
cagaatcaaaaaacacatcaaatcctaaaatcttaaacacatcaacaacaccttttttaac |
70 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27439051 |
cagaaccaaaaaatacatcaaatcctaaaatcttaaacacatcaacaacaccttgtttaac |
27439111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 9928440 - 9928392
Alignment:
| Q |
10 |
cagaatcaaaaaacacatcaaatcctaaaatcttaaacacatcaacaac |
58 |
Q |
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||||| || ||||||||||||||||||||| |||||||||||||||||| |
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| T |
9928440 |
cagaaccagaaaacacatcaaatcctaaaagcttaaacacatcaacaac |
9928392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 13800304 - 13800352
Alignment:
| Q |
7 |
atacagaatcaaaaaac-acatcaaatcctaaaatcttaaacacatcaa |
54 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
13800304 |
atacagaatcaaaaaaatacttcaaatcctaaaatcttaaacacatcaa |
13800352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 25570080 - 25570282
Alignment:
| Q |
20 |
aaacacatcaaatcctaaaatcttaaacacatcaacaacaccttttttaaccttcatnnnnnnngcccaaagaaaataaagctaatccaccatgttccca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
25570080 |
aaacacatcaaatcctaaaatcttaaacacatcaacaacaccttctttaaccttcataaaaaaagcccatagaaaataaagctaatccaccatgttccca |
25570179 |
T |
|
| Q |
120 |
aattaagaatacacaaaacccttggtttcaccgttgaaattgattattatagcagtaaggaattattgttaaggaacgaggagatcatggagacaattac |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25570180 |
aattaagaatacacaaaacccttggtttcaccgttgaaattgattattatag-agtaaggaattattgttaaggaacgaggagatcatggagacaattac |
25570278 |
T |
|
| Q |
220 |
aaac |
223 |
Q |
| |
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|||| |
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|
| T |
25570279 |
aaac |
25570282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 25570043 - 25570090
Alignment:
| Q |
7 |
atacagaatcaaaaaacacatcaaatcctaaaatcttaaacacatcaa |
54 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25570043 |
atacataatcaaaaaacacatcaaatcttaaaatcttaaacacatcaa |
25570090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 48311 - 48251
Alignment:
| Q |
10 |
cagaatcaaaaaacacatcaaatcctaaaatcttaaacacatcaacaacaccttttttaac |
70 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
48311 |
cagaaccaaaaaatacatcaaatcctaaaatcttaaacacatcaacaacaccttgtttaac |
48251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 52767899 - 52767855
Alignment:
| Q |
161 |
gattattatagcagtaaggaattattgttaaggaacgaggagatc |
205 |
Q |
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||||||||||| | ||| |||||||||||||| |||||||||||| |
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| T |
52767899 |
gattattatagtaataaagaattattgttaagaaacgaggagatc |
52767855 |
T |
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