View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_high_4 (Length: 504)
Name: NF16774_high_4
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Complemental strand, 3600698 - 3600226
Alignment:
| Q |
13 |
caagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacaggattgtgactagcatattcatagtc |
112 |
Q |
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| T |
3600698 |
caagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacaggattgtgactagcatattcatagtc |
3600599 |
T |
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| Q |
113 |
ctgttacagacataacattaaatcatacttgctggttatgatctctttatcttgaaactaagatatttgaccnnnnnnnnnnnnnnntaacgaaggaaag |
212 |
Q |
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| T |
3600598 |
ctgttacagacataacattaaatcatacttgctggttatgatctcttgatcttgaaactaagatatttgaccaaaaaaaaaaaaa---aacgaaggaaag |
3600502 |
T |
|
| Q |
213 |
aaagaaagaccatccaaatgattgagtgaatcagtttctcatactactagccatgttaaatgaacaaataaaataaaggaggaaagtgatcacataatat |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3600501 |
aaagaaagaccaaccaaatgattgagtgaatcagtttctcatactactagccatgttaaatgaacaaataaaacaaaggaggaaagtgatcacataatat |
3600402 |
T |
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| Q |
313 |
atgtcatcatttcacattttatatcacatctgtcatccttgactcccaatatgtatacaattttaaaattttagctttcaaaatgtagatgagtctcagc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3600401 |
atgtcatcatttcacattttatatcacatctgtcatccttgactcccaatatgtatacaattttaaaattttagctttcaaaatgtagatgagtctcagc |
3600302 |
T |
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| Q |
413 |
aagaaggaaactaacaacactcatcaggctgcaaaaatcttctccccacgttcaaaatgctatccggccataaata |
488 |
Q |
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| T |
3600301 |
aagaaggaaactaacaacactcatcaggctgcaaaaatcttctccccacgttcaaaatgctatccggccataaata |
3600226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 15545801 - 15545906
Alignment:
| Q |
15 |
agaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacaggattgtgactagcatattcatagtcct |
114 |
Q |
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|||||||| || ||||| ||||| || ||||||||||| ||| |||||||||||||||||||||| || || ||||| | ||| ||||| ||||| |||| |
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| T |
15545801 |
agaatatgtggagtttcggtatgataatttgcagccatttcagagaagtggtttgctatatcatatgcaactggattataacttgcatactcataatcct |
15545900 |
T |
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| Q |
115 |
gttaca |
120 |
Q |
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||||| |
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| T |
15545901 |
attaca |
15545906 |
T |
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