View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_10 (Length: 417)
Name: NF16774_low_10
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 34215041 - 34215440
Alignment:
| Q |
10 |
gaagcagcagagacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaatagtagctttaacacttttta |
109 |
Q |
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| T |
34215041 |
gaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaatagtagctttaacacttttta |
34215140 |
T |
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| Q |
110 |
ggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtcttgggaattttcctactgtatatctgctaagaagacttgc |
209 |
Q |
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| T |
34215141 |
ggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtcaag---aatttcctactgtatatctgctaagaagacttgc |
34215237 |
T |
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| Q |
210 |
aaccctgttgtatatgtcaataattttttcatccattttaggcattggtggcaacagttcctattaatctttttatcaatcatcaatatacattcagaac |
309 |
Q |
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| T |
34215238 |
aaccctgttgtatatgtcaagaattttttcatccattttaggcattggtggcaacagttcctattaatctttttatcaatcatcaatatacattcagaac |
34215337 |
T |
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| Q |
310 |
ctctt------------atcataggttccgcaataataattaacaatggtttatgagacagaaataannnnnnnaaagcaactcttgtgtcagagtttcc |
397 |
Q |
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| T |
34215338 |
ctcttcgacgccgcaaaatcataggttccgcaataataattaacaatggtttatgagacagaaataatttttttaaagcaactcttgtgtcagagtttcc |
34215437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 10637708 - 10637903
Alignment:
| Q |
23 |
cttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaatagtagcttt-----aacactttttaggtgcagt |
117 |
Q |
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| T |
10637708 |
cttgtagaagcgctcagccttttttgcaccgaaattagaagcaaaaatcctagtggcttgaaacaa----agcatttggagaccacttttgaggttcagt |
10637803 |
T |
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| Q |
118 |
agcatataagaccttcacccaattttgcattgaggggatgtgtttaaatgtcttgggaatttt-cctactgtatatctgctaagaagacttgcaaccctg |
216 |
Q |
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| T |
10637804 |
aagatataagacctcctcccaattttgcatcgaagggatgtgtttaaatgccttggggattttgcctactgtatatctgctaagaagatctgcaaccctg |
10637903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 10638048 - 10638091
Alignment:
| Q |
217 |
ttgtatatgtcaataattttttcatccattttaggcattggtgg |
260 |
Q |
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| T |
10638048 |
ttgtatatgtcaagaattttttcatccattttaggcactggtgg |
10638091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 11213382 - 11213333
Alignment:
| Q |
315 |
atcataggttccgcaataataattaacaatggtttatgagacagaaataa |
364 |
Q |
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| T |
11213382 |
atcaaaggttccgcaataataatcaacaatgatttatgagacagaaataa |
11213333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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