View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_17 (Length: 261)
Name: NF16774_low_17
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 13786727 - 13786490
Alignment:
| Q |
9 |
gtatttatataaaaacattatcaatgaatgtagttgacaaatgtggaccttcctggaacttcattagcaatctagcatgatactatatcgtgtttgttca |
108 |
Q |
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| T |
13786727 |
gtatttatataaaaacattatcaatgaatgtagttgacaaatgtggaccttcctggaacttcattagcaatctagcatgatactatatcgtgtttgttca |
13786628 |
T |
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| Q |
109 |
tattaaataaataaattaaatatgttagtattattctttgtatatgggaaaagatcttgacttgcttctgattttaatgcactaaatactgaaaataata |
208 |
Q |
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| T |
13786627 |
tattaaataaataaattaaatatgttagtattattctttgtatatgggaaaagatcttgacttgcttctgattttaatgcactaaatactgaaaataata |
13786528 |
T |
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| Q |
209 |
atccaggatctgattcagattgttgaaaatgaacttgg |
246 |
Q |
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| T |
13786527 |
atccaggatctgattcagatcgttgaaaatgaacttgg |
13786490 |
T |
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Back To:
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 28167119 - 28167170
Alignment:
| Q |
195 |
tactgaaaataataatccaggatctgattcagattgttgaaaatgaacttgg |
246 |
Q |
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| T |
28167119 |
tactgaaaataataatccaggatctgattcagatcgttgaaaatgaacttgg |
28167170 |
T |
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