View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_18 (Length: 251)
Name: NF16774_low_18
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 40647424 - 40647183
Alignment:
| Q |
11 |
taatactcagagacaaagagaaacaaaaaatatacaagtcaaatcagtaagaggggtttagaggttacatgtcaagttaatacatgatagaaatgtaatg |
110 |
Q |
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| T |
40647424 |
taatactcagagacaaagagaaacaaaaaatatacaagtcaaatcagtaagagggatttagaggttacatgtcaagttaatacatgatagaaatgtaatg |
40647325 |
T |
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| Q |
111 |
atagtaaa-ggtttaattgttgttattggagtcaaaacctgcaggcatgccaacaaaaataaaataagtcaaatcattaaaagagatttagagatcatat |
209 |
Q |
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| T |
40647324 |
atagtaaaaggtttaattgttgttattggagtcaaaacctgcagacatgccaacaaaaataaaataagtcaaatcattaaaagagatttagagatcatat |
40647225 |
T |
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| Q |
210 |
gcgaacttaagatatggtagaaatgaagtgacagtagaagat |
251 |
Q |
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| T |
40647224 |
gcgaacttaagatatgatagaaatgaagtgacagtagaagat |
40647183 |
T |
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