View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_19 (Length: 249)
Name: NF16774_low_19
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_19 |
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| [»] scaffold0384 (2 HSPs) |
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| [»] scaffold0079 (2 HSPs) |
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Alignment Details
Target: scaffold0384 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4918 - 4826
Alignment:
| Q |
1 |
caaagcgtatatatgatgattgtacttatcaggaatgtccatctttgaatatctcacaagcgtcacaaatgggtaactcaaatcacctctttc |
93 |
Q |
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| T |
4918 |
caaagcgtacatatgatgattgtacttatcaggaatgtccgtctttgaatatctcacaagcgtcacaaatgggtaactcaaatcacctctttc |
4826 |
T |
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Target: scaffold0384; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 4760 - 4682
Alignment:
| Q |
159 |
agattaggaaagtgaaagtaagttttcccaatgctgtaatggtgtattaccttacagcatattaaaatatcctcaccct |
237 |
Q |
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| T |
4760 |
agattaggaaagtgaaagtaagttttcccaatgctgtaatggtgtattaacttacagcatattaaaatatcctcaccct |
4682 |
T |
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Target: scaffold0079 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 7274 - 7200
Alignment:
| Q |
164 |
aggaaagtgaaagtaagttttccc-aatgctgtaatggtgtattaccttacagcatattaaaatatcctcaccct |
237 |
Q |
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| T |
7274 |
aggaaagtgaaagtaagttttccccaatgctgtaatggtgtattaacttacagcatattaaaatatcctcaccct |
7200 |
T |
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Target: scaffold0079; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7304 - 7270
Alignment:
| Q |
1 |
caaagcgtatatatgatgattgtacttatcaggaa |
35 |
Q |
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| T |
7304 |
caaagcgtatatatgatgattgtacttatcaggaa |
7270 |
T |
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