View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_2 (Length: 536)
Name: NF16774_low_2
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 36539816 - 36540315
Alignment:
| Q |
15 |
cagagacatttgtgatggtttcaaatgatttgaaacttttgccactagattaggtaacaatacatattctgattggggttttagtgtcccaaatacacct |
114 |
Q |
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| T |
36539816 |
cagagacatttgtgatggtttcaaatgatttgaaacttttgccactagattaggtaacaatacatattctgattggggttttagtgtcccaaatacacct |
36539915 |
T |
|
| Q |
115 |
tgatctgttccaaaatcaatatatggttagtagttaagcctttgatacaaatacagggttgtgaagggtaaggccactcggtgtgtgtttgattatgcgg |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36539916 |
tgatctgttccaaaat----atatggttagtagttaagcctttgatacaaatatagggttgtgaagggtaaggccactcggtgtgtgtttggttatgcgg |
36540011 |
T |
|
| Q |
215 |
tggtgaaaattgagtttgattcggtcagactcaattctatatagcagaagcactttatattttttcaaccaaacaccaattttagagtagtaaatcacgt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36540012 |
tggtgaaaattgagtttgattcggtcagactcaattctatagagcagaagcactttatattttttcaaccaaacaccaattttagagtagtaaatcacgt |
36540111 |
T |
|
| Q |
315 |
tcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaagacggtcatcttaggactaannnnnnnagtgtttttacttaata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
36540112 |
tcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaagatggtcatcttaggactaatttttttagtgtttttacttaata |
36540211 |
T |
|
| Q |
415 |
aaaaggtttaataatttactttcaaaactaaaattaatatagtttcaaataatattaaattaattgactttaatccacgtgagattaactcagttggtag |
514 |
Q |
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| T |
36540212 |
aaaaggtttaataatttactttcaaaactaaaattaatatagtttcaaataatattaaattaattgactttaatccccgtgagcttaactcagttggtag |
36540311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 35550372 - 35550332
Alignment:
| Q |
195 |
gtgtgtgtttgattatgcggtggtgaaaattgagtttgatt |
235 |
Q |
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| T |
35550372 |
gtgtgtgtttgattttgcggtggcgaaaattgattttgatt |
35550332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 32273105 - 32273046
Alignment:
| Q |
313 |
gttcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaaga |
372 |
Q |
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||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32273105 |
gttcaaaggattttgacgtgcgtttggccattcaaacggccaaccaaacatatactaaga |
32273046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 24552009 - 24551950
Alignment:
| Q |
313 |
gttcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaaga |
372 |
Q |
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||||| |||| |||||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
24552009 |
gttcaaagcaatttgacgtgcgtttggccattcaaactgccaaccaaacatatacgaaga |
24551950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 23964752 - 23964811
Alignment:
| Q |
313 |
gttcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaaga |
372 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23964752 |
gttcaaagcaatttgacgtgcgtttggccattcaaacggccaaccaaacatatactaaga |
23964811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 34660471 - 34660405
Alignment:
| Q |
266 |
actttatattttttcaaccaaacaccaattttagagtagtaaatcacgttcatagcattttgacgtg |
332 |
Q |
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| T |
34660471 |
actttgtattttttcaaccaaacaccaattttagagaagtaaaccatgttcatagcgttttggcgtg |
34660405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 13573848 - 13573907
Alignment:
| Q |
313 |
gttcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaaga |
372 |
Q |
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||||| |||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
13573848 |
gttcaaagcaatttgacgtgcgtttggccattgaaacggccaaccaaaaatatactaaga |
13573907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 13899752 - 13899811
Alignment:
| Q |
313 |
gttcatagcattttgacgtgcgtttggccattcaaacgggcaaccaaacatatactaaga |
372 |
Q |
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||||| |||| |||||||||||||||||||||||||| | ||| |||||||||||||||| |
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| T |
13899752 |
gttcaaagcaatttgacgtgcgtttggccattcaaactgccaaacaaacatatactaaga |
13899811 |
T |
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