View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16774_low_20 (Length: 240)

Name: NF16774_low_20
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16774_low_20
NF16774_low_20
[»] scaffold0384 (2 HSPs)
scaffold0384 (17-102)||(5331-5416)
scaffold0384 (153-225)||(5206-5278)
[»] scaffold0079 (2 HSPs)
scaffold0079 (33-102)||(7661-7730)
scaffold0079 (153-225)||(7545-7617)
[»] chr4 (2 HSPs)
chr4 (153-202)||(9511071-9511120)
chr4 (52-97)||(9510975-9511020)
[»] chr2 (8 HSPs)
chr2 (153-202)||(29284520-29284569)
chr2 (153-202)||(29305900-29305949)
chr2 (52-102)||(29285644-29285694)
chr2 (52-102)||(29305997-29306047)
chr2 (153-202)||(29282536-29282585)
chr2 (153-202)||(29285740-29285789)
chr2 (52-102)||(29284615-29284665)
chr2 (52-102)||(29307028-29307078)
[»] chr8 (1 HSPs)
chr8 (52-93)||(17844781-17844822)
[»] chr3 (1 HSPs)
chr3 (153-190)||(34106337-34106374)
[»] chr1 (1 HSPs)
chr1 (52-80)||(12499997-12500025)


Alignment Details
Target: scaffold0384 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 5416 - 5331
Alignment:
Q  17 taccgtacgtaccaaaccgtacccgtttttacatggatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5416 taccgtacgtaccaaaccgtacccgtttttacttggatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 5331  T

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Target: scaffold0384; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 5278 - 5206
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgttttattatcaatgcacccgtacctttg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  5278 caacaacaatggtagtaactcacttggaaaatctttttcttgacgttttattatcaatctacccatacctttg 5206  T

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Target: scaffold0079 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 7730 - 7661
Alignment:
Q  33 ccgtacccgtttttacatggatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7730 ccgtacccgtttttacttggatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 7661  T

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Target: scaffold0079; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 7617 - 7545
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgttttattatcaatgcacccgtacctttg 225  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7617 caacaacaatgttagtaactctcttggaaaatctttttcttgacgttttattatcaatgtacccgtacctttg 7545  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 9511071 - 9511120
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgtttta 202  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  9511071 caacaacaattgtattaactcacttggaaaatctttttcttgacgtttta 9511120  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 9510975 - 9511020
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaatagtat 97  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||    
T  9510975 gatgatagaagtgtggttaaagacgtgattcaattacgaatagtat 9511020  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 29284569 - 29284520
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgtttta 202  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  29284569 caacaacaattgtattaactcacttgaaaaatctttttcttgacgtttta 29284520  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 29305949 - 29305900
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgtttta 202  Q
    |||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  29305949 caacaacaattgtattaactcacttggaaaatctttttcttgatgtttta 29305900  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 29285644 - 29285694
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||| ||||    
T  29285644 gatgatagaagtgtggttaaacacgtgattcaattacgaatagtattatac 29285694  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 29306047 - 29305997
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||| ||||    
T  29306047 gatgatagaagtgtggttaaacacgtgattcaattacgaatagtattatac 29305997  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 29282536 - 29282585
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgtttta 202  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||||||||||    
T  29282536 caacaacaattgtattaactcacttgaaaaatccttttcttgacgtttta 29282585  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 29285740 - 29285789
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatctttttcttgacgtttta 202  Q
    |||||||| | ||| |||||||||||||||||||||||||||| ||||||    
T  29285740 caacaacacttgtattaactcacttggaaaatctttttcttgaggtttta 29285789  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 29284665 - 29284615
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||||||||||| ||||| |||| | |||||||| ||||    
T  29284665 gatgatagaagtgtggttaaacacgtgattcaatttcgaatagtattatac 29284615  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 29307028 - 29307078
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaatagtatgatac 102  Q
    |||||||||||||||||||||||| ||||| |||||  |||||||| ||||    
T  29307028 gatgatagaagtgtggttaaacacgtgattcaattaagaatagtattatac 29307078  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 17844822 - 17844781
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgattgaattacaaata 93  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  17844822 gatgatggaagtgtggttaaacacatgattaaattacaaata 17844781  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 34106337 - 34106374
Alignment:
Q  153 caacaacaatggtagtaactcacttggaaaatcttttt 190  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  34106337 caacaacaatggtagtaattcacttggaaaatattttt 34106374  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 12499997 - 12500025
Alignment:
Q  52 gatgatagaagtgtggttaaacacatgat 80  Q
    |||||||||||||||||||||||||||||    
T  12499997 gatgatagaagtgtggttaaacacatgat 12500025  T

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