View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16774_low_22 (Length: 226)

Name: NF16774_low_22
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16774_low_22
NF16774_low_22
[»] chr6 (13 HSPs)
chr6 (3-226)||(18872788-18873011)
chr6 (3-226)||(18805794-18806017)
chr6 (1-226)||(16867610-16867832)
chr6 (1-226)||(16658343-16658565)
chr6 (8-166)||(18870316-18870474)
chr6 (13-226)||(16838012-16838225)
chr6 (13-226)||(16797500-16797713)
chr6 (10-226)||(17069840-17070053)
chr6 (1-226)||(16987788-16988013)
chr6 (5-222)||(16781443-16781660)
chr6 (71-222)||(16844171-16844322)
chr6 (1-51)||(18794223-18794273)
chr6 (107-169)||(16788356-16788418)
[»] scaffold0230 (1 HSPs)
scaffold0230 (3-226)||(5013-5236)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-226)||(9693-9918)
[»] scaffold0133 (2 HSPs)
scaffold0133 (1-226)||(13183-13408)
scaffold0133 (6-226)||(8841-9061)
[»] scaffold0144 (1 HSPs)
scaffold0144 (1-226)||(37821-38043)
[»] chr3 (2 HSPs)
chr3 (12-222)||(38938966-38939176)
chr3 (1-222)||(7052862-7053083)
[»] chr8 (1 HSPs)
chr8 (5-222)||(13378435-13378652)
[»] scaffold0256 (1 HSPs)
scaffold0256 (27-222)||(9488-9683)
[»] chr5 (1 HSPs)
chr5 (119-186)||(16397584-16397651)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 18872788 - 18873011
Alignment:
Q  3 aatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcga 102  Q
    ||||||||||||||  ||||||  |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||    
T  18872788 aatggcgccaaactttttctgtcatcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgagtttcttctaagtcatgctgtcga 18872887  T
Q  103 tagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacac 202  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  18872888 tagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtcttcaatgatgaaagggtagatacacac 18872987  T
Q  203 tttgacttgaaaatatgggtgtgt 226  Q
    ||| ||||||||||||||||||||    
T  18872988 tttaacttgaaaatatgggtgtgt 18873011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 18805794 - 18806017
Alignment:
Q  3 aatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcga 102  Q
    ||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||    
T  18805794 aatggcgccaaactaattcagtcatcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgagtttcttctaagtcatgctgtcga 18805893  T
Q  103 tagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacac 202  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||    
T  18805894 tagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtattcaatgatgaaagggtagatacacac 18805993  T
Q  203 tttgacttgaaaatatgggtgtgt 226  Q
    ||| ||||||||||||||||||||    
T  18805994 tttaacttgaaaatatgggtgtgt 18806017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16867610 - 16867832
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||| |||| |||| || ||| |||||||||||||||||||    |||| |||| |  |||| |||||||||||||   |||||| |    
T  16867610 tgaatggcgccaaactatttctattgttaccgaaccgaaagtatatggaagagacaaagataaagagcagattgtagagtttcttctaa---atgctagc 16867706  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||    
T  16867707 gacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtcttcaatgatgaaagggtaaaaacac 16867806  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    | ||||||||||||||||||||||||    
T  16867807 attttgacttgaaaatatgggtgtgt 16867832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16658565 - 16658343
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||| ||||  |||||| ||| |||||||||||||||||||    |||| |||| |  |||| |||||||||||||   |||||| |    
T  16658565 tgaatggcgccaaactatttctactgtcaccgaaccgaaagtatatggaagagacaaagataaagagcagattgtagagtttcttctaa---atgctagc 16658469  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||| | ||||||||||||||| ||||||| ||||    
T  16658468 gacagtgaagaactctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtcttcaatgatgaaagggtaaaaacac 16658369  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    | ||||||||||||||||||||||||    
T  16658368 attttgacttgaaaatatgggtgtgt 16658343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 18870316 - 18870474
Alignment:
Q  8 cgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtg 107  Q
    ||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||| | || ||||    
T  18870316 cgccaaactacttctgtcgtcactgaaccaaaagtttatggaagagatcgtgatagagagaaagtttttgagtttctgctaagtcatgctcttgacagtg 18870415  T
Q  108 aagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgct 166  Q
    ||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  18870416 aagaactctctttctattccattgttggtgttggtgggcaaggaaaaacaacacttgct 18870474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 16838225 - 16838012
Alignment:
Q  13 aactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtgaagaa 112  Q
    ||||||||||| |||||| ||| | |||||||||||||||||    |||| |||| |  |||| ||||||||| || |||||||||   | |||||||||    
T  16838225 aactacttctgctgtcaccgaaccaaaagtatatggaagagacaaagataaagagcagattgtagagtttcttatagggcatgctagtaacagtgaagaa 16838126  T
Q  113 ctctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactttgacttga 212  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  16838125 ctctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttga 16838026  T
Q  213 aaatatgggtgtgt 226  Q
    ||||||||||||||    
T  16838025 aaatatgggtgtgt 16838012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 16797713 - 16797500
Alignment:
Q  13 aactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtgaagaa 112  Q
    ||||||||||| |||||| ||| | |||||||||||||||||    |||| |||  |  |||| |||||||||||| |||||||||     |||||||||    
T  16797713 aactacttctgctgtcaccgaaccaaaagtatatggaagagacaaagataaagaacagattgtagagtttcttctagggcatgctagtaccagtgaagaa 16797614  T
Q  113 ctctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactttgacttga 212  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||| |||||||||| ||||||| ||||| ||||||||||    
T  16797613 ctctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttga 16797514  T
Q  213 aaatatgggtgtgt 226  Q
    ||||||||||||||    
T  16797513 aaatatgggtgtgt 16797500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 17070053 - 17069840
Alignment:
Q  10 ccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtgaa 109  Q
    |||||||| ||||| | |||| ||| |||||||||||||||||||    |||| |||| |  |||| |||||||||||||   ||||||  || ||||||    
T  17070053 ccaaactatttctgctatcaccgaaccgaaagtatatggaagagacaaagataaagagcagattgtagagtttcttctaa---atgctagtgacagtgaa 17069957  T
Q  110 gaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactttgact 209  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||| |||||||||| ||||||| ||||| |||||||    
T  17069956 gaactctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgact 17069857  T
Q  210 tgaaaatatgggtgtgt 226  Q
    |||||||||||||||||    
T  17069856 tgaaaatatgggtgtgt 17069840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16988013 - 16987788
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||| ||||  | |||| ||| |||||||||||||||||||    |||| |||  |  |||| |||||||||||||| |||||||      
T  16988013 tgaatggcgccaaactatttctactatcacagaaccgaaagtatatggaagagacaaagataaagaacagattgtagagtttcttctaagacatgctagt 16987914  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || |||||| |||||||||||||||||||||||||    ||||||   ||||||||| ||||||||||| | ||||||||||||||| | ||||| ||||    
T  16987913 gacagtgaaaaactctctgtctattccattgttggccacggtggatatggaaaaacagcacttgctcaaatggtcttcaatgatgaaagtgtaaagacac 16987814  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    | ||||||||||||||||||||||||    
T  16987813 attttgacttgaaaatatgggtgtgt 16987788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 16781660 - 16781443
Alignment:
Q  5 tggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgata 104  Q
    ||||| |||||||| |||||  |||||||||| |||||||||||||||||  | |||| |||  || ||||||||| |||||| |||||||||| | |||    
T  16781660 tggcggcaaactacctctgtcatcactgaatccaaagtatatggaagagacagagataaagaacaaattgttgagtatcttctgaggcatgctagcaata 16781561  T
Q  105 gtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactt 204  Q
    ||||||| |||||||||||||||||||||||  | ||||||   ||||||||||||||||||||| | || | ||| |||||| | ||||  || || ||    
T  16781560 gtgaagatctctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtatacaaggatgaaagcgtaaccacccattt 16781461  T
Q  205 tgacttgaaaatatgggt 222  Q
    ||| ||||||||||||||    
T  16781460 tgatttgaaaatatgggt 16781443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 16844322 - 16844171
Alignment:
Q  71 gttgttgagtttcttctaaggcatgctatcgatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaag 170  Q
    ||||||||||||||||||||||||||||| || |  |||| |||||||||||||||||||||||||  |||||||   ||||| ||| |||||||||||     
T  16844322 gttgttgagtttcttctaaggcatgctattgacaaggaaggactctctgtctattccattgttggtcatggtggatatggaaagacagcacttgctcaac 16844223  T
Q  171 tcgtcttcaatgatgaacgggtaaatacacactttgacttgaaaatatgggt 222  Q
    | ||||||||||||||  |||||||||| || |||   ||||||||||||||    
T  16844222 tggtcttcaatgatgagagggtaaatactcattttcctttgaaaatatgggt 16844171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18794223 - 18794273
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaag 51  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  18794223 tgaatggcgccaaactacttcagtcgtcactgaaccgaaagtatatggaag 18794273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 16788418 - 16788356
Alignment:
Q  107 gaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaa 169  Q
    |||||||||||||||||||||||||||||  | |||| |   |||||||||||||||||||||    
T  16788418 gaagaactctctgtctattccattgttggcctaggtgaatatggaaaaacaacacttgctcaa 16788356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 5236 - 5013
Alignment:
Q  3 aatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcga 102  Q
    ||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||    
T  5236 aatggcgccaaactttttctgtcgtcactgaaccgaaagtatatggaagagatcgtgacagagagcaagttgttgagtttcttctaagtcatgctgtcga 5137  T
Q  103 tagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacac 202  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||    
T  5136 tagtgaagaactctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgaggaaagggtagatacacac 5037  T
Q  203 tttgacttgaaaatatgggtgtgt 226  Q
    ||| ||||||||||||||||||||    
T  5036 tttaacttgaaaatatgggtgtgt 5013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9918 - 9693
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||| | |     
T  9918 tgaatggcgccaaactacttcagtcgtcactgaaccgaaagtatatggaagagaccgtgacagagagcaagttgttgagtttcttctaagtcatgttgtg 9819  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||| ||||| ||||||    
T  9818 gatagtgaagaactctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgatgaaagggtagatacac 9719  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    ||||| ||||||||||||||||||||    
T  9718 actttaacttgaaaatatgggtgtgt 9693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13408 - 13183
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    |||| |||  |  |||| |||||||| |||||||| || |      
T  13408 tgaatggcgccaaactacttctgctgtcaccgaaccgaaagtatatggaagagacaaagataaagaacagattgtagagtttctgctaaggcacgccagt 13309  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || ||||||||||||||||||||||||||||||||    ||||||   ||||||||||||||||||||| | ||||||||||||||| | ||||| ||||    
T  13308 gagagtgaagaactctctgtctattccattgttggccacggtggatatggaaaaacaacacttgctcaaatggtcttcaatgatgaaagtgtaaagacac 13209  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    | ||||||||||||||||||||||||    
T  13208 attttgacttgaaaatatgggtgtgt 13183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 9061 - 8841
Alignment:
Q  6 ggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatag 105  Q
    |||| |||||||| |||||  |||||||||| |||||||||||||||||    |||| |||| |  |||| |||||||||||| |||| |||   || ||    
T  9061 ggcggcaaactacctctgtcatcactgaatccaaagtatatggaagagacaaagataaagagcatattgtagagtttcttctacggcacgctggtgacag 8962  T
Q  106 tgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacacttt 205  Q
    ||||||||||||||||||||| ||||||||    ||||||   |||||||||||||||||||||   ||||||||||||||| ||||||| ||||| |||    
T  8961 tgaagaactctctgtctattctattgttggccacggtggatatggaaaaacaacacttgctcaaacagtcttcaatgatgaaagggtaaagacacatttt 8862  T
Q  206 gacttgaaaatatgggtgtgt 226  Q
    |||||||||||||||||||||    
T  8861 gacttgaaaatatgggtgtgt 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38043 - 37821
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||| ||||  |||||| ||| |||||||||||||||||||    |||| |||  |  |||| |||||||||||||   |||| | |    
T  38043 tgaatggcgccaaactatttctactgtcaccgaaccgaaagtatatggaagagacaaagataaagaacagattgtagagtttcttctaa---atgccagc 37947  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || ||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||| |||||| | |||| |||||||||| ||||||| ||||    
T  37946 gaaagtgaagaactctttgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacac 37847  T
Q  201 actttgacttgaaaatatgggtgtgt 226  Q
    | ||||||||||||||||||||||||    
T  37846 attttgacttgaaaatatgggtgtgt 37821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 38938966 - 38939176
Alignment:
Q  12 aaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtgaaga 111  Q
    ||||||| |||||  ||||||||||  ||||||||||||||||    |||| |||  || ||||||||| |||||| |||||||||| | | ||||||||    
T  38938966 aaactacctctgtcatcactgaatccgaagtatatggaagagacaaagataaagaacaaattgttgagtatcttctgaggcatgctaacaacagtgaaga 38939065  T
Q  112 actctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactttgacttg 211  Q
     |||||||||||||||||||||||| | ||||||   ||||||||||||||||||||| | |||| |||  ||||| | ||||  || || ||||| |||    
T  38939066 tctctctgtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaacaatgaaagcgtaaccacccattttgatttg 38939165  T
Q  212 aaaatatgggt 222  Q
    |||||||||||    
T  38939166 aaaatatgggt 38939176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7052862 - 7053083
Alignment:
Q  1 tgaatggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatc 100  Q
    ||||||||||||||||||||||||  ||||||||      ||||||||||||||    |||| ||||||  |||| ||||||||||| ||||||||||      
T  7052862 tgaatggcgccaaactacttctgtcatcactgaagttgtggtatatggaagagacaaagataaagagaagattgtcgagtttcttctgaggcatgctagt 7052961  T
Q  101 gatagtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacac 200  Q
    || ||||||||||||||| ||||| ||||||||||     |||||   ||||||||||||||||||||| | ||||  || |||||| | ||||  || |    
T  7052962 gacagtgaagaactctctatctatcccattgttggccacagtggatatggaaaaacaacacttgctcaattggtctataacgatgaaagtgtaagcaccc 7053061  T
Q  201 actttgacttgaaaatatgggt 222  Q
    | ||||||||||||||||||||    
T  7053062 attttgacttgaaaatatgggt 7053083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 13378652 - 13378435
Alignment:
Q  5 tggcgccaaactacttctgttgtcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgata 104  Q
    |||||||||||||||||| |  ||||| |||| |||||||||||||||||    |||| |||  || ||||||||| |||||||||| |||| |   | |    
T  13378652 tggcgccaaactacttctatcatcactaaatccaaagtatatggaagagacaaagataaagaacaaattgttgagtatcttctaagggatgcaagtaaca 13378553  T
Q  105 gtgaagaactctctgtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactt 204  Q
    | |||||  ||||||||||||||||||||||  | ||||||   ||||||||||||||||||||| | || | ||| ||||||   ||||  || |||||    
T  13378552 gagaagatatctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatgaaaacgtaagcacccactt 13378453  T
Q  205 tgacttgaaaatatgggt 222  Q
    ||||||||||||||||||    
T  13378452 tgacttgaaaatatgggt 13378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 9683 - 9488
Alignment:
Q  27 tcactgaatcgaaagtatatggaagagatcgtgatagagagaaagttgttgagtttcttctaaggcatgctatcgatagtgaagaactctctgtctattc 126  Q
    |||||||||| | ||||| |||||||||    |||| ||| ||| ||||||||| |||||| |||||||||| | | |||||||| ||||||||||||||    
T  9683 tcactgaatccatagtatttggaagagacaaagataaagaaaaaattgttgagtatcttctgaggcatgctagcaacagtgaagatctctctgtctattc 9584  T
Q  127 cattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatgaacgggtaaatacacactttgacttgaaaatatgggt 222  Q
    |||||||||  | ||||||   ||||||||||||||||||||| | || | ||| || ||| | ||||  || || ||||| ||||||||||||||    
T  9583 cattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacgaagaaagcgtaaccacccattttgatttgaaaatatgggt 9488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 16397651 - 16397584
Alignment:
Q  119 gtctattccattgttggtgttggtggactaggaaaaacaacacttgctcaagtcgtcttcaatgatga 186  Q
    |||||| | ||||||||  | ||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  16397651 gtctatccaattgttgggctaggtggactaggtaaaacaacacttgctcaactcgtcttcaatcatga 16397584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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