View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16774_low_6 (Length: 471)

Name: NF16774_low_6
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16774_low_6
NF16774_low_6
[»] chr4 (6 HSPs)
chr4 (240-469)||(6601108-6601337)
chr4 (1-238)||(6598573-6598809)
chr4 (10-237)||(24903477-24903705)
chr4 (157-237)||(18772960-18773040)
chr4 (166-233)||(36499822-36499889)
chr4 (164-231)||(55524726-55524793)
[»] chr2 (8 HSPs)
chr2 (244-469)||(3702206-3702431)
chr2 (10-237)||(19988430-19988658)
chr2 (10-176)||(41634521-41634686)
chr2 (164-237)||(35001197-35001270)
chr2 (166-233)||(8276469-8276536)
chr2 (166-233)||(11574585-11574652)
chr2 (9-102)||(8276308-8276402)
chr2 (9-94)||(35001343-35001429)
[»] chr8 (6 HSPs)
chr8 (13-237)||(13867643-13867868)
chr8 (12-237)||(15895952-15896178)
chr8 (11-200)||(24621462-24621652)
chr8 (10-141)||(10362953-10363085)
chr8 (164-233)||(34277166-34277235)
chr8 (15-51)||(18327874-18327910)
[»] chr7 (5 HSPs)
chr7 (9-237)||(13069628-13069857)
chr7 (30-237)||(23561518-23561726)
chr7 (25-237)||(2835373-2835586)
chr7 (157-237)||(2368932-2369012)
chr7 (112-200)||(11357103-11357191)
[»] chr5 (8 HSPs)
chr5 (9-237)||(15234235-15234464)
chr5 (9-237)||(20245021-20245244)
chr5 (14-237)||(29961032-29961256)
chr5 (47-200)||(14218508-14218662)
chr5 (166-233)||(30490820-30490887)
chr5 (112-237)||(20886923-20887048)
chr5 (166-233)||(5505699-5505766)
chr5 (166-233)||(762377-762444)
[»] chr3 (4 HSPs)
chr3 (9-237)||(30529246-30529476)
chr3 (112-200)||(11917723-11917811)
chr3 (166-237)||(35996452-35996523)
chr3 (166-233)||(39648996-39649063)
[»] scaffold0632 (1 HSPs)
scaffold0632 (9-76)||(2387-2454)
[»] scaffold0599 (1 HSPs)
scaffold0599 (112-200)||(9474-9562)
[»] chr1 (3 HSPs)
chr1 (166-233)||(33618678-33618745)
chr1 (166-233)||(35564393-35564460)
chr1 (112-200)||(12064342-12064430)
[»] scaffold0700 (2 HSPs)
scaffold0700 (13-102)||(602-692)
scaffold0700 (164-237)||(465-538)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 240 - 469
Target Start/End: Original strand, 6601108 - 6601337
Alignment:
Q  240 tggatcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctagggaacatgattaa 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6601108 tggatcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctaaggaacatgattaa 6601207  T
Q  340 gttccaagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6601208 gttccaagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactc 6601307  T
Q  440 tgcttggaaagttttgatttctcttctgtg 469  Q
    | ||||||||||||||||||||||||||||    
T  6601308 tccttggaaagttttgatttctcttctgtg 6601337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6598573 - 6598809
Alignment:
Q  1 cttgccggtaactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactcaggttatgaattccactaagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6598573 cttgccggtaactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaacttaggttatgaattccactaagca 6598672  T
Q  101 ttttcaaccaacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6598673 ttttcaaccaccaatcatttgtat-cttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccttcaaggtacggtttctt 6598771  T
Q  201 tctcttcttttgtagtttgtattcaccactcctttcag 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6598772 tctcttcttttgtggtttgtattcaccactcctttcag 6598809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 24903477 - 24903705
Alignment:
Q  10 aactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaac 108  Q
    ||||||||||||| |||||||| ||| ||||||||||||||| || | | || || ||||  |||||||| ||||  ||| |||| |||| ||   ||||    
T  24903477 aactcttttcttcccctcctctcttagtctacccgcaagaaggtgacagtctgaccttggctccaactcatggttgcgaactccattaagaatggccaac 24903576  T
Q  109 caacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttct 208  Q
    || || |||||||| | ||| |||||| |||||| || | |  | |  |||||| |||||||||||||| |||| |||||||||   || ||  || |||    
T  24903577 caccattcatttgtcttcttctcaaagtaaccacacatctttaacggacaatcacatttccttgagcccatgccttcaaggttctactttttcttcatct 24903676  T
Q  209 tttgtagtttgtattcaccactcctttca 237  Q
    || ||||||||||| ||||||||||||||    
T  24903677 ttggtagtttgtatacaccactcctttca 24903705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 18773040 - 18772960
Alignment:
Q  157 caatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca 237  Q
    |||||| |||| |||||||||||||  ||||| ||| ||||||| ||| ||||| || |||||||| ||||||||||||||    
T  18773040 caatcacattttcttgagcccgtgctttcaagattcagtttcttcctcctctttggtggtttgtatacaccactcctttca 18772960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 36499889 - 36499822
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  36499889 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 36499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 55524793 - 55524726
Alignment:
Q  164 atttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactc 231  Q
    ||||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||| ||||||    
T  55524793 atttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattctccactc 55524726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 244 - 469
Target Start/End: Complemental strand, 3702431 - 3702206
Alignment:
Q  244 tcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctagggaacatgattaagttc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||    
T  3702431 tcataagtttctgtgtaaactcattatattgttagatttttggtatttgattgtgttttgaattcattactgttgttttctatggaacatgataaagctc 3702332  T
Q  344 caagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctgct 443  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||| ||    
T  3702331 caagtactttcatatgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctcct 3702232  T
Q  444 tggaaagttttgatttctcttctgtg 469  Q
    ||||||||||||||||||||||||||    
T  3702231 tggaaagttttgatttctcttctgtg 3702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 19988658 - 19988430
Alignment:
Q  10 aactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactcag-gttatgaattccactaagcattttcaac 108  Q
    ||||||||||||||||||| |||||||||||||||||||||| || ||  ||||  ||||  || |||||  ||| ||||||| | |||||||   ||||    
T  19988658 aactcttttcttctcctccacttttattctacccgcaagaaggtgaccacctaaatttggctcctactcatagttgtgaattcaattaagcatgaccaac 19988559  T
Q  109 caacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttct 208  Q
    || ||||||||||||| ||| |||||| |||||||||||||| | |  |||||| ||||||||||||| ||||| ||||| |||   ||||| ||| |||    
T  19988558 caccaatcatttgtattcttctcaaagtaaccacgcaacctaaacggacaatcacatttccttgagcctgtgccttcaagattcaacttcttcctcctct 19988459  T
Q  209 tttgtagtttgtattcaccactcctttca 237  Q
    || || |||||||| ||  ||||||||||    
T  19988458 ttggtggtttgtatacattactcctttca 19988430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 41634521 - 41634686
Alignment:
Q  10 aactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactcagg-ttatgaattccactaagcattttcaac 108  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||| || ||  ||||| ||||  |||||||| | || ||||||||| |||||||   ||||    
T  41634521 aactcttttctcctcctcctcttttagtctacccacaa-aaggtgaccacctaaccttgggtccaactcatgattgtgaattccattaagcatgaccaac 41634619  T
Q  109 caacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcc 176  Q
    || |||||||||||||  || |||||| |||||||||||||| |  | |||||| |||||||||||||    
T  41634620 caccaatcatttgtattattctcaaaggaaccacgcaaccta-aacaacaatcacatttccttgagcc 41634686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 35001270 - 35001197
Alignment:
Q  164 atttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca 237  Q
    |||||||||||||| |||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||||||    
T  35001270 atttccttgagcccatgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcctttca 35001197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8276469 - 8276536
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  8276469 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 8276536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 11574652 - 11574585
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  11574652 ttccttgagcccgtgccttcaagcttcggtttcttcctcatcttaggtggcttgtattcaccactcct 11574585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 8276308 - 8276402
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcatt 102  Q
    ||||||||| |||||||||| |||||| || |||||||||||| ||||||  |||  |||  ||||| ||| ||||||||| ||||| |||||||    
T  8276308 taactctttgcttctcctccccttttagtcgacccgcaagaaggtggccggataaatttgacgccaagtcatggttatgaactccacaaagcatt 8276402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 35001429 - 35001343
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccac 94  Q
    ||||||||| |||||||||| |||||| || |||||||||||| ||| ||  |||| |||| ||||| ||| |||| ||||||||||    
T  35001429 taactctttgcttctcctccacttttagtcgacccgcaagaaggtggtcggataactttggcgccaagtcatggttgtgaattccac 35001343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 13867643 - 13867868
Alignment:
Q  13 tcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaaccaa 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||| |||| |||||||||| |||||||   | |||     
T  13867643 tcttttcttctcctcctcttttattctacccgcaagaaggtggccgactaactttgacgccaactcatggttgtgaattccacaaagcattgcaatccat 13867742  T
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttctttt 211  Q
    ||||||||||||||||| | ||||||||||| ||||||| |  | || ||| ||||||||||||||||||| | |||||| |||||||| ||| |||||     
T  13867743 caatcatttgtatcctttttaaagaaaccacacaacctaaacaaacattcacatttccttgagcccgtgccttgaaggtttggtttcttcctcatctttg 13867842  T
Q  212 gtagtttgtattcaccactcctttca 237  Q
    || |||||||||||||| ||||||||    
T  13867843 gtggtttgtattcaccattcctttca 13867868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 15895952 - 15896178
Alignment:
Q  12 ctcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaacca 110  Q
    |||||||||||||||||||||||| |||||||||||| || |||| | ||||| ||||||| || ||| |||| |||||||||| |||||||   | |||    
T  15895952 ctcttttcttctcctcctcttttagtctacccgcaaggaggtggctggctaactttggtgcaaaatcatggttgtgaattccacaaagcattgcaatcca 15896051  T
Q  111 acaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttt 210  Q
     ||||| ||||||||||| |||||||||| |||||||||| | |  || ||| ||||||||||||  ||||| |||||||| |||||||| ||| ||||     
T  15896052 ccaatcttttgtatccttttcaaagaaacaacgcaacctaaacggacattcacatttccttgagcatgtgccttcaaggtttggtttcttcctcatctta 15896151  T
Q  211 tgtagtttgtattcaccactcctttca 237  Q
     || |||||||||||||||||||||||    
T  15896152 ggtggtttgtattcaccactcctttca 15896178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 24621462 - 24621652
Alignment:
Q  11 actcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaacc 109  Q
    |||||||||||||| ||| |||||| |||||||| |||||| |||  ||||||| |||| ||||||||| | || |||||||||| |||||||   | ||    
T  24621462 actcttttcttctcttccgcttttagtctacccgtaagaaggtggtggactaactttggcgccaactcatgattgtgaattccacaaagcattcaaaccc 24621561  T
Q  110 aacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    | ||||| ||||  ||||| |||||||||||  |||||||| |||  || ||  |||||||||||||| |||| |||||||||| ||||||    
T  24621562 accaatcttttgattccttttcaaagaaaccttgcaacctacatggacattcgtatttccttgagcccatgccttcaaggttcgatttctt 24621652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 10363085 - 10362953
Alignment:
Q  10 aactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaac 108  Q
    ||||||| |||||||||||||||||| |||| | ||||||||||| ||| ||||| |||   | |||||| |||| |||| |||| |||||||| | |||    
T  10363085 aactcttctcttctcctcctcttttagtctaactgcaagaagatgaccgcctaactttgcctcaaactcatggttgtgaaatccattaagcattgttaac 10362986  T
Q  109 caacaatcatttgtatccttatcaaagaaacca 141  Q
    || |||||| |||| | ||| |||||| |||||    
T  10362985 caccaatcacttgtcttcttctcaaagtaacca 10362953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 34277235 - 34277166
Alignment:
Q  164 atttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| | ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  34277235 atttccttgagcccgtgacttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 34277166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 18327874 - 18327910
Alignment:
Q  15 ttttcttctcctcctcttttattctacccgcaagaag 51  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18327874 ttttcttctcctcctctttaagtctacccgcaagaag 18327910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 13069628 - 13069857
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||| || | ||||||||||  |||||| | |     
T  13069628 taactcttttcttctcctcctcttttattctacccgcaagaagatggtcggctaactttggcgccaactcatggctgtgaattccacagagcattgtaat 13069727  T
Q  108 ccaacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttc 207  Q
    ||| ||||||||| ||||||| ||||||||||||||||||||| | |  || ||| ||||| |||  | |||||| ||||||||||||||||| ||| ||    
T  13069728 ccaccaatcatttatatccttttcaaagaaaccacgcaacctaaacggacattcacatttcattgttcacgtgccttcaaggttcggtttcttcctcatc 13069827  T
Q  208 ttttgtagtttgtattcaccactcctttca 237  Q
    ||  || |||||||||||||||||||||||    
T  13069828 ttaggtggtttgtattcaccactcctttca 13069857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 23561518 - 23561726
Alignment:
Q  30 cttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaaccaacaatcatttgtatcctt 128  Q
    |||||||| ||||  ||||||| ||| |||||||| |||| | ||||||| |||| |||||||||||||||||| | | ||| |||||||||||||||||    
T  23561518 cttttattatacctacaagaaggtgggcgactaactttggcggcaactcatggttgtgaattccactaagcattgtaacccaccaatcatttgtatcctt 23561617  T
Q  129 atcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcacca 228  Q
    |||||||||||||| ||||||| | || || |||  ||| |||||||| ||||| | |||||| ||||| ||  || ||||| || |||||| | ||| |    
T  23561618 atcaaagaaaccacacaacctaaacgaacattcacttttacttgagcctgtgcctttaaggtttggttttttcgtcgtctttggtggtttgtgtacacta 23561717  T
Q  229 ctcctttca 237  Q
    |||||||||    
T  23561718 ctcctttca 23561726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 2835586 - 2835373
Alignment:
Q  25 ctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaaccaacaatcatttgta 123  Q
    ||||||||||||||||||||||||||| || ||| ||||| |||   |||||||| |||| |||||||||||||||||   |||||| |||  | |||||    
T  2835586 ctcctcttttattctacccgcaagaaggtgaccgcctaactttgactccaactcatggttgtgaattccactaagcatggacaaccaccaaaaaattgta 2835487  T
Q  124 tccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtatt 223  Q
    | ||| |||||| |||||||||||||| | || |||||| ||||||||||||   |||| ||||| |||  |||||| ||| ||||  || ||||| ||     
T  2835486 ttcttctcaaagtaaccacgcaacctaaacgaacaatcacatttccttgagcttatgccttcaagattcaatttcttcctcctcttcggtggtttgaata 2835387  T
Q  224 caccactcctttca 237  Q
    ||||||||||||||    
T  2835386 caccactcctttca 2835373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 2368932 - 2369012
Alignment:
Q  157 caatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca 237  Q
    |||||||||||||||||||||||||| ||||| || |||||||| ||| ||||  || | ||||||||||||||| |||||    
T  2368932 caatcaaatttccttgagcccgtgccttcaagctttggtttcttcctcgtcttaggtggcttgtattcaccactcttttca 2369012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 11357191 - 11357103
Alignment:
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    |||||||||||||| ||||||||||||||   ||||||| | |  |||| | ||||| |||||||  |||| |||||||||||||||||    
T  11357191 caatcatttgtatctttatcaaagaaacctttcaacctaaacggacaattacatttcattgagccgatgccttcaaggttcggtttctt 11357103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 15234235 - 15234464
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaa 107  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||| |||||||||||||| |||| |||||||||| |||||||   |     
T  15234235 taactcttttcttctcctcctcttttagtttacccgcaagaaggtggccggctaactttggtgccaactcatggttgtgaattccacaaagcattgcaat 15234334  T
Q  108 ccaacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttc 207  Q
    ||| ||||| ||||||||||| | |||||||||| ||||| || | |  || ||| |||||||||||||| |||  |||||||| |||||||| ||| ||    
T  15234335 ccaccaatcttttgtatccttttgaaagaaaccatgcaacataaacggacattcacatttccttgagcccatgcattcaaggtttggtttcttcctcgtc 15234434  T
Q  208 ttttgtagtttgtattcaccactcctttca 237  Q
    ||  || |||||||||||||||||||||||    
T  15234435 ttaggtcgtttgtattcaccactcctttca 15234464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 20245244 - 20245021
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaa 107  Q
    ||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| |||| ||||||||| |||  ||||||||||||||||||   |     
T  20245244 taactcttttcttctcctcctatttttttctacccacaagaaggtggccgactaactttggcgccaactcatggtggtgaattccactaagcattgcaat 20245145  T
Q  108 ccaacaatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttc 207  Q
    ||| ||| ||||||||||||| ||||||||||||||||||||| | |  || | | |||||||||||||||| || |     |||| |||||| ||| ||    
T  20245144 ccaccaaccatttgtatccttttcaaagaaaccacgcaacctaaacggacattgacatttccttgagcccgt-cctt-----ttcgatttcttcctcgtc 20245051  T
Q  208 ttttgtagtttgtattcaccactcctttca 237  Q
    ||| || |||||||||||||| ||||||||    
T  20245050 tttggtggtttgtattcaccattcctttca 20245021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 29961032 - 29961256
Alignment:
Q  14 cttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaaccaac 112  Q
    ||||||||||||||| |||||| |||||| |||||||| |||||| ||||| |||| ||||||||| |||| || ||||||| |||||||   | ||| |    
T  29961032 cttttcttctcctccgcttttagtctacctgcaagaaggtggccgtctaactttggcgccaactcatggttgtgcattccacaaagcattgcaatccacc 29961131  T
Q  113 aatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttcttttg 212  Q
    |||| |||||||||||||||||||||||  ||||||||   || || ||  ||||||||||||||||| | |||||||| |||||||| ||| ||||  |    
T  29961132 aatcttttgtatccttatcaaagaaaccttgcaacctaagcgaacattcccatttccttgagcccgtgtcttcaaggtttggtttcttcctcgtcttagg 29961231  T
Q  213 tagtttgtattcaccactcctttca 237  Q
    | | |||||||||||||| ||||||    
T  29961232 tggcttgtattcaccactgctttca 29961256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 14218508 - 14218662
Alignment:
Q  47 agaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttcaaccaacaatcatttgtatccttatcaaagaaaccacgca 145  Q
    ||||| |||||| ||||| |||||| ||||||| |||| ||||||||||||||||||   ||||| | ||||||||||||||||||||||||||||||||    
T  14218508 agaaggtggccggctaactttggtgtcaactcatggttgtgaattccactaagcattgctaaccacccatcatttgtatccttatcaaagaaaccacgca 14218607  T
Q  146 acctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    |||||     ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  14218608 acctaagcagtcaatcacatttccttgagcccgtgccttcaagcttcggtttctt 14218662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 30490820 - 30490887
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| |||| ||| | |||||||||||||||||    
T  30490820 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttatgtggcttgtattcaccactcct 30490887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 20886923 - 20887048
Alignment:
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctcttctttt 211  Q
    |||||||||||||| |||||||| |||||   ||||||| |||  |||| | |||||||||||||  |||| ||||||||| ||||||| ||  ||||      
T  20886923 caatcatttgtatctttatcaaaaaaacctttcaacctaaatggacaattacatttccttgagccaatgccttcaaggttcagtttcttccttgtcttag 20887022  T
Q  212 gtagtttgtattcaccactcctttca 237  Q
    || |||||||||  ||||||||||||    
T  20887023 gtggtttgtatttcccactcctttca 20887048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 5505766 - 5505699
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  5505766 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 5505699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 762377 - 762444
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    |||||||||| |||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  762377 ttccttgagctcgtgccttcaagcttcggtttcttcctcgtcttaagtggcttgtattcaccactcct 762444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 30529476 - 30529246
Alignment:
Q  9 taactcttttcttctcctcctcttttattcta-cccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcattttca 106  Q
    ||||||||||||| ||||||||||||| |||| |||||| |||| |||||||||||| |||| ||||| ||  |||| |||||||||| |||||||   |    
T  30529476 taactcttttcttgtcctcctcttttagtctaacccgcaggaaggtggccgactaactttggcgccaaatcgtggttgtgaattccacaaagcattgcaa 30529377  T
Q  107 accaacaatcatttgtatccttatcaaagaaaccacgcaacctata-tgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctttctct 205  Q
     ||| ||||| ||||||||||| ||||||||||||||||||||| | ||| || ||| |||||||||||| |||||| ||||||||| |||||||||||     
T  30529376 tccaccaatcttttgtatccttttcaaagaaaccacgcaacctaaactga-cattcacatttccttgagctcgtgccttcaaggttcagtttctttctcg 30529278  T
Q  206 tcttttgtagtttgtattcaccactcctttca 237  Q
    | ||  || |||||| ||||||||| ||||||    
T  30529277 ttttaggtggtttgtgttcaccacttctttca 30529246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 11917811 - 11917723
Alignment:
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    |||||||||||||||||||||||||||||   ||||||| | |  |||| | |||||||||||||  |||  |||||||||||||||||    
T  11917811 caatcatttgtatccttatcaaagaaacctttcaacctaaacggacaattacatttccttgagccgatgcgttcaaggttcggtttctt 11917723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 35996523 - 35996452
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca 237  Q
    |||||||||| |||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||||||    
T  35996523 ttccttgagctcgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcctttca 35996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 39648996 - 39649063
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  39648996 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 39649063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 2387 - 2454
Alignment:
Q  9 taactcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaac 76  Q
    |||||||||||||||||||| |||||| || |||||||||||| |||||| ||||| |||||||||||    
T  2387 taactcttttcttctcctccgcttttagtcgacccgcaagaaggtggccggctaactttggtgccaac 2454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 9562 - 9474
Alignment:
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    |||||||||||||||||||||||||||||   ||||||| | |  |||| | |||||||||||||  |||  |||||||||||||||||    
T  9562 caatcatttgtatccttatcaaagaaacctttcaacctaaacggacaattacatttccttgagccgatgcgttcaaggttcggtttctt 9474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 33618678 - 33618745
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  33618678 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 33618745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 35564393 - 35564460
Alignment:
Q  166 ttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcct 233  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||||  || | |||||||||||||||||    
T  35564393 ttccttgagcccgtgccttcaagcttcggtttcttcctcgtcttaggtggcttgtattcaccactcct 35564460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 12064430 - 12064342
Alignment:
Q  112 caatcatttgtatccttatcaaagaaaccacgcaacctatatgatcaatcaaatttccttgagcccgtgccatcaaggttcggtttctt 200  Q
    ||||||||| |||| |||||||| |||||   ||||||| |||  |||| | |||||||||||||  |||| |||||||||||||||||    
T  12064430 caatcatttatatctttatcaaaaaaacctttcaacctaaatggacaattacatttccttgagccgatgccttcaaggttcggtttctt 12064342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 692 - 602
Alignment:
Q  13 tcttttcttctcctcctcttttattctacccgcaagaagatggccgactaacattggtgccaactca-ggttatgaattccactaagcatt 102  Q
    ||||| |||||||||| |||||| || |||||||||||| ||||||  |||| |||| | ||| ||| |||| |||||||||| |||||||    
T  692 tctttgcttctcctccacttttagtcgacccgcaagaaggtggccggataactttggcgtcaagtcatggttctgaattccacaaagcatt 602  T

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Target: scaffold0700; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 538 - 465
Alignment:
Q  164 atttccttgagcccgtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca 237  Q
    ||||||||| ||| ||||| ||||| ||| ||||||| ||| ||||  |||| ||||||| |||||||||||||    
T  538 atttccttgtgcctgtgccttcaagcttcagtttcttcctcgtcttaggtagcttgtattgaccactcctttca 465  T

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