View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_7 (Length: 462)
Name: NF16774_low_7
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 15868708 - 15869140
Alignment:
| Q |
13 |
aaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15868708 |
aaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagttg |
15868807 |
T |
|
| Q |
113 |
aagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgnnnnnnntttcctttttgcttatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15868808 |
aagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgaaaaaa-tttcctttttgcttatc |
15868906 |
T |
|
| Q |
213 |
ctaatgctcttcgaaaaggtgtagttcctatgaagcactgacacatacacgaaaaccagacaagacactttcactgccacatttattctaaagtgttggt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
15868907 |
ctaatgctcttcgaaaaggtgtagttcctatgaagcattgacacatacacgaaaaccagacaagacactttcactgacacatttattctaaagtgtcggt |
15869006 |
T |
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| Q |
313 |
gcaacatagattcttaattatatccttaatatcttagattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaagagaggaagcac |
412 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15869007 |
gcaacatagatacttaattatatccttaatatctccgattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaagagaggaagcac |
15869106 |
T |
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| Q |
413 |
attgttggaatgactggagatggtgtgaatgatg |
446 |
Q |
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| T |
15869107 |
attgttggaatgactggagatggtgtgaatgatg |
15869140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 303 - 437
Target Start/End: Complemental strand, 15162018 - 15161884
Alignment:
| Q |
303 |
aagtgttggtgcaacatagattcttaattatatccttaatatcttagattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaaga |
402 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15162018 |
aagtgttggtgcaagatagattcttaattatatccttaatatctcctattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaaga |
15161919 |
T |
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| Q |
403 |
gaggaagcacattgttggaatgactggagatggtg |
437 |
Q |
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| T |
15161918 |
gaggaagcacattgttggaatgactggagatggtg |
15161884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 53075858 - 53075704
Alignment:
| Q |
9 |
agcaaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttcca |
108 |
Q |
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||||||||||||||| |||||||||| |||||||| ||||||||||||||| | ||||| | |||||||| ||||| |||||| |||| ||||||||| |
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| T |
53075858 |
agcaaaggagactggccggagacttgggatgggaactaatatgtatccatctgccaccttacttggtcaagacaaagacgcaaatattgccgcacttcca |
53075759 |
T |
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| Q |
109 |
gttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcat |
163 |
Q |
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||||||||||||||||||||||| || || ||||| ||||| ||||||||||||| |
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| T |
53075758 |
gttgaagagctgattgagaaggctgatgggtttgctggagtatttccaggttcat |
53075704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 48437017 - 48436981
Alignment:
| Q |
410 |
cacattgttggaatgactggagatggtgtgaatgatg |
446 |
Q |
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| T |
48437017 |
cacattgttggtatgactggtgatggtgtgaatgatg |
48436981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 1497324 - 1497177
Alignment:
| Q |
12 |
aaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagtt |
111 |
Q |
| |
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|||||| |||||||| || ||||| |||||||| || ||||||||||| ||| | ||| | |||||||| |||||| | | || | || ||||||||| |
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| T |
1497324 |
aaaggaaactggtagaaggcttggaatgggaacaaacatgtatccatcgtctgctttgcttggtcaagacaaagattcttctatttcggctcttccagtt |
1497225 |
T |
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| Q |
112 |
gaagagctgattgagaaggcagacggatttgccggagtttttccaggt |
159 |
Q |
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|| ||| |||| |||||||| || |||||||| ||||| ||||||||| |
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| T |
1497224 |
gacgagttgatcgagaaggctgatggatttgcaggagtatttccaggt |
1497177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 1462567 - 1462645
Alignment:
| Q |
366 |
cagaacataagtatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatga |
444 |
Q |
| |
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||||||| || ||||||||||| |||| | |||||||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
1462567 |
cagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatatttgtggaatgactggagatggtgtaaatga |
1462645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 1462287 - 1462336
Alignment:
| Q |
110 |
ttgaagagctgattgagaaggcagacggatttgccggagtttttccaggt |
159 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
1462287 |
ttgacgagttgattgagaaggctgacggatttgccggagtatttccaggt |
1462336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 50275883 - 50276012
Alignment:
| Q |
31 |
cttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagttgaagagctgattgagaagg |
130 |
Q |
| |
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||||| |||||||| || ||||||||||||||| | ||| | |||||| || ||||| |||| | || ||||||||||| ||| |||||||||||| |
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| T |
50275883 |
cttggaatgggaacgaacatgtatccatcttcttcattgctcggtcaaagcaaggatgctgctgtttcagctcttccagttgatgagttgattgagaagg |
50275982 |
T |
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| Q |
131 |
cagacggatttgccggagtttttccaggtt |
160 |
Q |
| |
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| || |||||||| ||||| ||||| |||| |
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| T |
50275983 |
ctgatggatttgctggagtgtttcctggtt |
50276012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 9543945 - 9543912
Alignment:
| Q |
413 |
attgttggaatgactggagatggtgtgaatgatg |
446 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
9543945 |
attgttgcaatgactggagatggtgtgaatgatg |
9543912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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