View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_8 (Length: 461)
Name: NF16774_low_8
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 118 - 446
Target Start/End: Original strand, 52035632 - 52035959
Alignment:
| Q |
118 |
tttttaaaaaagtgtcattttttagagaatgaaataaataaagtagctaaaatttaatacacactcattgcatcgttttgtcaatattgtgatcaaaagc |
217 |
Q |
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| T |
52035632 |
tttttacaaaagtgtcattttttagagaatgaaataaataaagtagctaaaatttaatacacactcattgcatcgttttgtcaatattgtgatcaaaagc |
52035731 |
T |
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| Q |
218 |
atctcatgtcatttttaactcgactcaacttgccgtatgagctatgatatacattgtcgggagagaacttattatctgtgaagcttctacaatattagta |
317 |
Q |
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| T |
52035732 |
atctcatgtcatttttaactcgactcaacttgccgtatgagcgatgatatacattgtcgggagagaacttattatctgtgaagcttctacaatattagta |
52035831 |
T |
|
| Q |
318 |
tttgtcaacaaaataattcgaagtaattgacannnnnnnataggtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagag |
417 |
Q |
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||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035832 |
tttgtaaacaaaataattcgaagtaattgata-ttttttatacgtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagag |
52035930 |
T |
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| Q |
418 |
gatggaattgataaaccactcaatagatt |
446 |
Q |
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| T |
52035931 |
gatggaattgataaaccactcaatagatt |
52035959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 52035590 - 52035641
Alignment:
| Q |
37 |
gatacgaataatatgctttttctttcacaatctttcattcaatttttacaaa |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035590 |
gatacgaataatatgctttttctttcacaatctttcattcaatttttacaaa |
52035641 |
T |
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