View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16774_low_9 (Length: 456)
Name: NF16774_low_9
Description: NF16774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16774_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 40349823 - 40350248
Alignment:
| Q |
16 |
agtaaggtccacaagaatcgacaaaagaaagtgaaaatgcagatagaaacaacatattttttgtatcatatatcatcatatttgagtaaccatgatgtat |
115 |
Q |
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| T |
40349823 |
agtaaggtccacaagaatcgacaaa-gaaagtgaaaatgcagatagaaacaacatattttttgtatcatatatcatcatatttgagtaaccatgatgtat |
40349921 |
T |
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| Q |
116 |
ggtcacaaagcttagatcaaaccaagaggaagaagaatctgagagtacatagtacacaaggtgggtgtggtgtggtcttgcagaagtggtcacgtgagac |
215 |
Q |
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| T |
40349922 |
ggtcacaaagcttagatcaaaccaaggggaagaagaatatgagagtacatagtacacaaggtgggtgtggtgtggtcttgcagaagtggtcacgtgagac |
40350021 |
T |
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| Q |
216 |
tgagagaaaaacaaataggagtggtagccccccattatcatgttactatctaatatctattaactcaaagagaatgttggtgaaaaacgcttgacagatt |
315 |
Q |
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| T |
40350022 |
tgagagaaaaacaaataggagtggtagccccccattatcatgttac-------tatctattaactcagagagaatgttggtgaaaaacgcttgacagatt |
40350114 |
T |
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| Q |
316 |
caactgaaaagctgagtgtgaaggaccacacacactaacaaaaaagggattctgattcccttttctcattgccttttacttggagatttttgtgctgtaa |
415 |
Q |
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| T |
40350115 |
caactgaaaagctgagtgtgaaggaccacacacactaacaaaaaagggattctgattcccttttctcattgccttttacttggagatttttgtgctgtaa |
40350214 |
T |
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| Q |
416 |
aggtttacattttttaagttgccctatccctatg |
449 |
Q |
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| T |
40350215 |
aggtttacattttttaagttgccctatccctatg |
40350248 |
T |
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