View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16775_high_6 (Length: 214)
Name: NF16775_high_6
Description: NF16775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16775_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33491018 - 33491218
Alignment:
| Q |
1 |
ctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33491018 |
ctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataatcaaccttcttatgctca |
33491117 |
T |
|
| Q |
101 |
tcaagttagttcttgatccattatttacatgatacttttaatctttactagctctgggtagcactttgatgatattggagtgccaatgtcatgtgacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33491118 |
tcaagttagttcttgatccattatttacatgatacttttaatctttactagctctgggtagcactttgatgatattggggtgccaatgtcatgtgacatt |
33491217 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
33491218 |
g |
33491218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 33419821 - 33419974
Alignment:
| Q |
2 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33419821 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat |
33419920 |
T |
|
| Q |
102 |
caagttagttcttgatccattatttacatgatacttttaatctttactagctct |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33419921 |
caagttagttcttgatccattatttacatgatacttttaatctttactagctct |
33419974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28812770 - 28812655
Alignment:
| Q |
1 |
ctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28812770 |
ctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctca |
28812671 |
T |
|
| Q |
101 |
tcaagttagttcttga |
116 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28812670 |
tcaagttagttcttga |
28812655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 33412742 - 33412837
Alignment:
| Q |
56 |
tcaaggaagctacatttctatatataaccaaccttcttatgctcatcaagttagttcttgatccattatttacatgatacttttaatctttactagctct |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||| |
|
|
| T |
33412742 |
tcaaggaagctacatttctatatataacca---ttcttatgctcatcaagttagttcttgatcaattgttggcatgata-ttttaatctttactagctct |
33412837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 3647554 - 3647508
Alignment:
| Q |
155 |
tgggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
201 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
3647554 |
tgggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
3647508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 22435345 - 22435387
Alignment:
| Q |
159 |
tagcactttgatgatattggagtgccaatgtcatgtgacattg |
201 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
22435345 |
tagcacttgggtgatattggggtgccaatgtcatgtgacattg |
22435387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 15057183 - 15057138
Alignment:
| Q |
156 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
201 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||||||||||||||||| |
|
|
| T |
15057183 |
gggtagcactttggtgacattggggtgtcaatgtcatgtgacattg |
15057138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 18182492 - 18182537
Alignment:
| Q |
156 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
201 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
18182492 |
gggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
18182537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 18182668 - 18182623
Alignment:
| Q |
156 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
201 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
18182668 |
gggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
18182623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University