View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16775_low_3 (Length: 398)
Name: NF16775_low_3
Description: NF16775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16775_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 3908830 - 3908444
Alignment:
| Q |
1 |
atcatccaaacatttaattttcgttagtgcttttcttattcggcaagctataagttcaattttccttnnnnnnnngaa---gctataagttcaatttcct |
97 |
Q |
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| T |
3908830 |
atcatccaaacatttaattttcgttagtacttttcttagtcaacaaactataagttcaattttccttcaaaataaaaaaaagctataagttcaatttcct |
3908731 |
T |
|
| Q |
98 |
ttgccttttccaatcccacgccaatttatagtcccaacttttaccttgatatattctatgcaaattaaataattaataactaccctctttttcccatgta |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3908730 |
ttgccttttctaatcccacgccaatttatagtcccaacttttaccttgatatattctatgcaaattaaataattaataactaccctctatttcccatgta |
3908631 |
T |
|
| Q |
198 |
tatatacatgttccctcnnnnnnntatgcgtgtaatgttagcaacttcatttaccaatttccttcacactttacatttgttacacctcttagttcaacca |
297 |
Q |
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||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3908630 |
tatatacatgttccctcaaaaaaatatgtgtgttatgttagcaacttcatttaccaatttccttcacactttacatttgttacacctcttagttcaacca |
3908531 |
T |
|
| Q |
298 |
tggctgactgtgatgttgaaacagttctttcctatcgttgcttgacaggtatgttagtttccattcatttcaatctttcatgatctt |
384 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3908530 |
tggctgactgtgatgttgaaacagttctttcctattgttgcttgacaggtatgttagtttccattcatttcaatctttcatgatctt |
3908444 |
T |
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