View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_high_11 (Length: 291)
Name: NF16776_high_11
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 6342541 - 6342273
Alignment:
| Q |
7 |
taaattatactgtttttt-gtcaagataagtaacataaagttgatttaataacttatttttccagattatttgtatgtattgttgtaagagatattgaag |
105 |
Q |
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| T |
6342541 |
taaattatattgtttttttgtcaagattagtgacataaagttgatttaataacttatttttccagattatttgtatgtattgttgtaagagatattgaag |
6342442 |
T |
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| Q |
106 |
gnnnnnnnntattaataccattaaatatttgaaaatcaatatcatataagacatgaaaattaattaatttttggatcatacatttagggagagtgtgttc |
205 |
Q |
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| T |
6342441 |
gaaaaaaaatattaataccattaaatatttgaaaatcaatatcatataagacatgaaaattaattaatttttggatcatacatttagggagagtgtgttc |
6342342 |
T |
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| Q |
206 |
aaaattgaaggtgaagaattgaatgatatagattgaaaatgtgacttctcatttatgagaggatctact |
274 |
Q |
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| T |
6342341 |
aaaattgaaggtgaagaattgaatgatatagattgaaaatgtgacttctcatttatgagaggatctact |
6342273 |
T |
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