View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_high_13 (Length: 250)
Name: NF16776_high_13
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_high_13 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 39705383 - 39705624
Alignment:
| Q |
8 |
acattgaatttcctgccatataagcatgcaaaatcagatttcatgagaatctctcaatccagtaaattatcaat------gtttgaaaaagatagcaccg |
101 |
Q |
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| T |
39705383 |
acattgaatttcctgccatataagcatgcaaaatcagatttcatgagaatctctcaatccagtaaattatcaattacaacgtttgaaaaagatagcaccg |
39705482 |
T |
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| Q |
102 |
gttggttttctaagccaaatcacaaaaagagagggaaaatatgcagacacaaaaattggctataaaatgacccgttcacacccaacttcaatgtgtcatt |
201 |
Q |
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| T |
39705483 |
gttggttttctaagccaaatcacaaaaagagagggaaaatatgcagacacaaaaattggctataaaatgacccgttcacacccaacttcaatgtgtcatt |
39705582 |
T |
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| Q |
202 |
tcttactcttaaatcacaaacacacacaaacatcctatgctt |
243 |
Q |
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| T |
39705583 |
tcttactcttaaatcacaaacacacacaaacatcctttgctt |
39705624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 49063255 - 49063481
Alignment:
| Q |
8 |
acattgaatttcctgccatataagc-atgcaaaatcagatttcatgagaatctctcaatccagtaaattatcaat------------------gtttgaa |
88 |
Q |
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| T |
49063255 |
acattgaatttcttgccatataagccatgtgaaaagagatttgttgagaatctctcaatccagtaaattatcaatgtaatgaaaaggtgttaagtttgaa |
49063354 |
T |
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| Q |
89 |
aaagatagcaccggttggttttctaagccaaatcacaaaaagagagggaaaatatgcagacacaaaaattggc--tataaaatgacccgttcacacccaa |
186 |
Q |
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| T |
49063355 |
aaagatggcacgggttggttttctaagccaaatcacaatgcaagacaaaaaatat--acacacaaaatgtggctatataaaatgacccctacacacccaa |
49063452 |
T |
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| Q |
187 |
cttcaatgtgtcatttcttactcttaaat |
215 |
Q |
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| T |
49063453 |
cttcaatgtgttatttcttactctaaaat |
49063481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 49048366 - 49048447
Alignment:
| Q |
148 |
acacaaaaattggctata--aaatgacccgttcacacccaacttcaatgtgtcatttcttactcttaaatcacaaacacaca |
227 |
Q |
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| T |
49048366 |
acacaaaaattgactatataaaaagacccctccacacccaattttaatgtgtcatttcttactctaaaataacaaacacaca |
49048447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 9758047 - 9757983
Alignment:
| Q |
162 |
tataaaatgacccgttcacacccaacttcaatgtgtcatttcttactcttaaatcacaaacacac |
226 |
Q |
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| T |
9758047 |
tataaaatgaccccttcacacccaacttcaatgtctcatttcttactctaagataacaaacacac |
9757983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 30496757 - 30496700
Alignment:
| Q |
149 |
cacaaaaattggctataaaatgacccgttcacacccaacttcaatgtgtcatttctta |
206 |
Q |
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| T |
30496757 |
cacaaaatttgtctataaaatgaccccttcacaccaaattacaatgtgtcatttctta |
30496700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 38728 - 38781
Alignment:
| Q |
157 |
ttggctataaaatgacccgttcacacccaacttcaatgtgtcatttcttactct |
210 |
Q |
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| T |
38728 |
ttggatataaaatgaccccttcacacccaacttcaatgggccatttcttactct |
38781 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 22651773 - 22651854
Alignment:
| Q |
148 |
acacaaaaattggctata--aaatgacccgttcacacccaacttcaatgtgtcatttcttactcttaaatcacaaacacaca |
227 |
Q |
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| T |
22651773 |
acacaaaaattgactatacaaaatcaccccttcacacccaatttcaatgtgtcattttgtactctaaaatatcaaacacaca |
22651854 |
T |
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