View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_high_3 (Length: 457)
Name: NF16776_high_3
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 55545385 - 55544947
Alignment:
| Q |
1 |
aagcacaacccactgatattttcatgctcaaggaaataggaattgaaataatgggtgcaatttagaaagctagtgcttcctcccatggaatatgtatgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55545385 |
aagcacaacccactgatattttcatgctcaaggaaataggaattgaaataatgggtgcaatttagaaagctagtgcttcctcccatggaatatctatgat |
55545286 |
T |
|
| Q |
101 |
aaagagaagtataatgacctagtatttaatcttttttcactgaaaattagtgcaggatgagtaggatttttattgatgttctgctttgtaacnnnnnnnn |
200 |
Q |
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| T |
55545285 |
aaagagaagtataatgacctagtatttaatcttttttcactgaaaattagtgcaggatgagtaggatttttattgatgttctgctttgtaac-ttttttt |
55545187 |
T |
|
| Q |
201 |
nnngtattttgtttcctggttcaatgttggatgcccaatatactaatttaactcagacgtggattgaataatggtgactgctttgnnnnnnnngtatcca |
300 |
Q |
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| T |
55545186 |
tttgtattttgtttcctggttcaatgttggatgcccaatatactaatttaactcagacgtggattgaataatggtgactgctttgttttttttgtatcca |
55545087 |
T |
|
| Q |
301 |
atgaaagctgataaaaagctcagcagcgctacttctgcagttatttcctggacagttactatgtggcagcatctaaggtgaagtttgcaattagtgtgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55545086 |
atgaaagctgataaaaagctcagcagcgctacttctgcagttatttcctggacagttactatgtggcagcatctaaggtgaagtttgcaattagtgtgtt |
55544987 |
T |
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| Q |
401 |
cttttagagaagttttgaggatagttcaccgcatcctttt |
440 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
55544986 |
cttttagagaagttttgaggatagttcaccacatcctttt |
55544947 |
T |
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