View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_high_9 (Length: 310)
Name: NF16776_high_9
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 5155161 - 5154927
Alignment:
| Q |
74 |
cattcatcataatataagaattgaagatgtgtacctaaag--------------ttgttgtaattgtaactcagaatcaaactccttaatgatgtgaatc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
5155161 |
cattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaagttgttgtatctcagaatcaaactccttaatgatgtgaatc |
5155062 |
T |
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| Q |
160 |
catgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataat |
259 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5155061 |
catgcaaacttgttatgatattgcagttcagcccattataggaaaggtctaagacctccaactcctttgatctcaaaaatccttcaacaatatacataat |
5154962 |
T |
|
| Q |
260 |
gaaaagcttttgttaattaatttcaattcctacca |
294 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5154961 |
gaaaagcttttgttaattaatttcaattcctacca |
5154927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 4843992 - 4844154
Alignment:
| Q |
132 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatc |
231 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4843992 |
agaatcaaactccttaatgatatgaaaccatgcaaacttgttatgatattgcagtttagctcattataggaaaggtctaagacctccaactcctttgatc |
4844091 |
T |
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| Q |
232 |
tcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctacca |
294 |
Q |
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| T |
4844092 |
tcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctacca |
4844154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 129 - 294
Target Start/End: Complemental strand, 5171686 - 5171521
Alignment:
| Q |
129 |
ctcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttg |
228 |
Q |
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|||| ||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
5171686 |
ctcaaaatcaaactccttaatgatatgaaaccatacaaacttgttatgatattgcagtttagctcattatgggaaaggtctaagacctccaactcctttg |
5171587 |
T |
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| Q |
229 |
atctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctacca |
294 |
Q |
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| T |
5171586 |
atctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctacca |
5171521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 5194322 - 5194148
Alignment:
| Q |
123 |
ttgtaactcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaact |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||| |||||||||||||| ||||||| |
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| T |
5194322 |
ttgtaactcagaatcaaactccttaatgatgtgaatccatgcaaacttgttattatgttgcaatttagcctatttcctgaaaggtctaagacttccaact |
5194223 |
T |
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| Q |
223 |
cctttgatctcgaaaatccttcaacaa----tatacataatgaaaagcttttgttaattaatttcaattcctacc |
293 |
Q |
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| T |
5194222 |
cctttgatctcgaaaatccttcaacaatatatatacataatgaaaagcttttgttaattaatttcaattcctacc |
5194148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 5181116 - 5180987
Alignment:
| Q |
132 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| || || || || ||| |||||||||||||| |||||||||||||||| |
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| T |
5181116 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgatatgatgttgcaattcagcctatttcctgaaaggtctaagacttccaactcctttgatc |
5181017 |
T |
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| Q |
232 |
tcgaaaatccttcaacaatatacataatga |
261 |
Q |
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| T |
5181016 |
tcgaaaatccttgaacaatatacataatga |
5180987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 5180924 - 5180886
Alignment:
| Q |
256 |
taatgaaaagcttttgttaattaatttcaattcctacca |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5180924 |
taatgaaaagcttttgttaattaatttcaattcctacca |
5180886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 5181188 - 5181148
Alignment:
| Q |
74 |
cattcatcataatataagaattgaagatgtgtacctaaagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5181188 |
cattcatcataatataagaattgaagatgtgtaccgaaagt |
5181148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 5194385 - 5194345
Alignment:
| Q |
74 |
cattcatcataatataagaattgaagatgtgtacctaaagt |
114 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |
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| T |
5194385 |
cattcgtcataatataagaattgaagatgtttacctaaagt |
5194345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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