View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_low_1 (Length: 640)
Name: NF16776_low_1
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 19 - 626
Target Start/End: Original strand, 35029307 - 35029909
Alignment:
| Q |
19 |
ggaattcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatcataccagaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029307 |
ggaattcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatcataccagaac |
35029406 |
T |
|
| Q |
119 |
cagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaggatccaattcaaataaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35029407 |
cagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaagatccaattcaaataaca |
35029506 |
T |
|
| Q |
219 |
ccaaaaacttgcttcaagaaatccaaggtgtgtcctgaaattttagagaaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaaca |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029507 |
ccaaaaacttgcttcaagaaatccaaagtgtgtcctgaaattttagagaaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaaca |
35029606 |
T |
|
| Q |
319 |
catggcttcacatcacaatcaccaggcacagttgcaaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029607 |
catggcttcacatcacaatcaccaggcacagttgcaaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataa |
35029706 |
T |
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| Q |
419 |
tgttgtttgttatattacaccaataagattctaacacaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttggga |
518 |
Q |
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| T |
35029707 |
tgttgtttgttatattacaccaataagattctaacacaacatg-----atcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttggga |
35029801 |
T |
|
| Q |
519 |
aggtagggaaagaaaagaacctatgacagacattattattatatgaatatgatgatgatatagacaaagtgaataatggatgaaagattatggtccaaat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35029802 |
aggtagggaaagaaaagaacctatgacagacattattattatatgaatatgatgatgatatagacaaagtgaattatggatgaaagattatggtccaaat |
35029901 |
T |
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| Q |
619 |
agtataat |
626 |
Q |
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|||||||| |
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| T |
35029902 |
agtataat |
35029909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 9e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 36860488 - 36860251
Alignment:
| Q |
23 |
ttcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatcata------ccaga |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
36860488 |
ttcctcgtcccctacaatttcaagaactaaaacgatgaaccgttaatgagcagaatctaccatataggtgataataattgttgatcatattcataccaga |
36860389 |
T |
|
| Q |
117 |
accagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaggatccaattcaaataa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
36860388 |
accagctgagagactccttgtagaatacatatgctcatggccataagcagacataataacactccaagcttaattta---ttaggatccaattcaaataa |
36860292 |
T |
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| Q |
217 |
ca--ccaaaaacttgcttcaagaaatccaaggtgtgtcctg |
255 |
Q |
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|| | ||||||| ||||||| |||||||||||||||||| |
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| T |
36860291 |
caagcttaaaacttacttcaagtaatccaaggtgtgtcctg |
36860251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 354 - 559
Target Start/End: Complemental strand, 36860186 - 36859983
Alignment:
| Q |
354 |
aaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaac |
453 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36860186 |
aaacaacattaattgctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccgataagattctaac |
36860087 |
T |
|
| Q |
454 |
acaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgc-agttaagccggtgatttgggaaggtagggaaagaaaaga--acctatgacagaca |
550 |
Q |
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|||||||| | ||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
36860086 |
acaacatg-----agcaaaacaaccatgttgtgagcatgtgtgcaagttaagcctgtgatttgggaaggtagggaaagaaaagagcacctaggacagaaa |
36859992 |
T |
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| Q |
551 |
ttattatta |
559 |
Q |
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||||||||| |
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| T |
36859991 |
ttattatta |
36859983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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