View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16776_low_10 (Length: 317)

Name: NF16776_low_10
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16776_low_10
NF16776_low_10
[»] chr3 (2 HSPs)
chr3 (3-308)||(25601743-25602048)
chr3 (1-308)||(25596936-25597252)
[»] chr5 (2 HSPs)
chr5 (1-244)||(19674990-19675233)
chr5 (1-244)||(19658151-19658394)
[»] chr4 (14 HSPs)
chr4 (3-254)||(36643440-36643691)
chr4 (114-254)||(36636745-36636885)
chr4 (6-90)||(18364242-18364326)
chr4 (6-90)||(36598599-36598683)
chr4 (5-73)||(36613342-36613410)
chr4 (141-244)||(36613165-36613268)
chr4 (3-73)||(3978136-3978206)
chr4 (114-199)||(36668463-36668548)
chr4 (114-222)||(35968458-35968566)
chr4 (187-254)||(36909764-36909831)
chr4 (1-55)||(35974043-35974097)
chr4 (3-55)||(18359232-18359284)
chr4 (3-55)||(36603644-36603696)
chr4 (16-76)||(55967007-55967067)
[»] chr1 (1 HSPs)
chr1 (1-206)||(42602730-42602935)
[»] chr8 (1 HSPs)
chr8 (3-71)||(35335885-35335953)
[»] chr7 (3 HSPs)
chr7 (1-55)||(32413658-32413712)
chr7 (3-68)||(6844163-6844228)
chr7 (3-55)||(44501441-44501493)
[»] chr6 (4 HSPs)
chr6 (1-55)||(33844280-33844334)
chr6 (3-55)||(33840288-33840340)
chr6 (114-152)||(33840185-33840223)
chr6 (114-176)||(33844153-33844215)
[»] chr2 (2 HSPs)
chr2 (1-46)||(43864058-43864103)
chr2 (2-63)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 25601743 - 25602048
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601743 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttg 25601842  T
Q  103 cggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaa 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25601843 cggcattcgtctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaacatccagcctcgactcctcaa 25601942  T
Q  203 aaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25601943 aaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgatagtgatctcattctccaatgtgtttcttca 25602042  T
Q  303 tctcac 308  Q
    | ||||    
T  25602043 tgtcac 25602048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 25596936 - 25597252
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttt 100  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||| |  |||||| ||||||||  ||| |||    
T  25596936 ccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatattgcattgccttgaattccccactatggagaattt 25597035  T
Q  101 tgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttga---------ctgtgatggtaatatccagcct 191  Q
    | |  ||| | | ||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||         || |||||||||||||| | ||    
T  25597036 tacctcatccgtatctaagattttaactcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtct 25597135  T
Q  192 cgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaat 291  Q
      ||||||||||||||| ||| | |||||||| |||||||||||||| || |  ||||||||| ||| |||||||||||||| || ||||||||| || |    
T  25597136 gaactcctcaaaaagatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgatagtggtctcattcttcatt 25597235  T
Q  292 gtgtttcttcatctcac 308  Q
    |||||||||||| ||||    
T  25597236 gtgtttcttcatgtcac 25597252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19675233 - 19674990
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttt 100  Q
    |||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||||| |||||||| ||  ||||| ||||| | |||   ||    
T  19675233 ccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactcttattttgcattcttccaaattttccactctgaagcaatt 19675134  T
Q  101 tgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctc 200  Q
    | ||  |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| ||||     
T  19675133 ttcgaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatcctt 19675034  T
Q  201 aaaaagattttaaagtatgtttcctctcataattcccaactcca 244  Q
    |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19675033 aaaaagattttagattatgtttgctcacataatacccacctcca 19674990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19658394 - 19658151
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttt 100  Q
    |||||||||||||  |||||||||| ||||||| | |||| ||||||| |||||| || ||||| |||||||| ||  ||||| ||||| | |||   ||    
T  19658394 ccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactcttattttgcattcttccaaattttccactctgaagcaatt 19658295  T
Q  101 tgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctc 200  Q
    | |   |||| |  |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| ||||     
T  19658294 ttccaaattcgtgcctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatcctt 19658195  T
Q  201 aaaaagattttaaagtatgtttcctctcataattcccaactcca 244  Q
    |||||||||||| | ||||||| ||| |||||| |||| |||||    
T  19658194 aaaaagattttagattatgtttgctcacataatacccacctcca 19658151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 36643691 - 36643440
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttg 102  Q
    |||||||| ||  |||||||||||||||||||| ||||||||  ||||||||| ||||||||||| ||||||||  | ||| | ||| | ||||  ||||    
T  36643691 gttcaaacctgtgttttgtccacaagatggaagcatctttgggcacgtattcctacccttatattacattcctcaaacttttcaactgtcaagaaatttg 36643592  T
Q  103 cggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaa 202  Q
    |   |||| | ||||| ||||||||||||||  |||||||| ||||  || | |||||  |||||||  ||  |||| ||||  | |||| |||||| ||    
T  36643591 ccatattcgtgtctaacattttgactcttcgcaatagctcaacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaa 36643492  T
Q  203 aaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 254  Q
    |||||||||||| ||| ||| ||| |||||| |||| |||||||||||||||    
T  36643491 aaagattttaaattatatttgctcccataatacccacctccacgaattagga 36643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 36636885 - 36636745
Alignment:
Q  114 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 213  Q
    ||||| || |||||||||||||||| |||| || || || | ||||||||||||||| || ||||||| ||  |||||| |||||| |||||||||||||    
T  36636885 tctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaa 36636786  T
Q  214 agtatgtttcctctcataattcccaactccacgaattagga 254  Q
    | ||||||||||| |||||| |||| ||||| || ||||||    
T  36636785 actatgtttcctcccataatacccacctccaggatttagga 36636745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 18364242 - 18364326
Alignment:
Q  6 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 90  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  18364242 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 18364326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 36598683 - 36598599
Alignment:
Q  6 caaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 90  Q
    ||||||| ||||||||| |||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  36598683 caaacttccattttgtctacaagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 36598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 36613410 - 36613342
Alignment:
Q  5 tcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattc 73  Q
    |||||||||  ||||||||||||| ||||||||||||||||||| |||||| || ||||  ||||||||    
T  36613410 tcaaacttgtgttttgtccacaaggtggaagtatctttggaaacttattccaactcttaatttgcattc 36613342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
Q  141 tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac 240  Q
    |||||| ||||| |||| |||||| ||||||||   ||||||||  |||||||| |||| ||||||||||| || |||||||||||  ||||| |||| |    
T  36613268 tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc 36613169  T
Q  241 tcca 244  Q
    ||||    
T  36613168 tcca 36613165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 3978136 - 3978206
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattc 73  Q
    |||||||||||| |||| ||||||||||  ||| |||||||||||||| |||| || |||| |||||||||    
T  3978136 gttcaaacttgcgttttatccacaagatataaggatctttggaaacgtcttcctactcttacattgcattc 3978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
Q  114 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct 199  Q
    |||||||||||||||||||||||||||||| || |||||   | ||||||| ||||| || |||||||| |  | |||||||||||    
T  36668548 tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct 36668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
Q  114 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 213  Q
    ||||||||||||||||||||||||| ||||  | || || | ||||||||| ||||| || ||||||||||  || ||| ||||||  ||||| |||||     
T  35968458 tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag 35968557  T
Q  214 agtatgttt 222  Q
    | |||||||    
T  35968558 actatgttt 35968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
Q  187 agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 254  Q
    |||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| |||||||||    
T  36909764 agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga 36909831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35974043 - 35974097
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    ||||||||| ||| |||||||||||||||||||   |||| ||||||||||||||    
T  35974043 ccgttcaaagttgtattttgtccacaagatggagacatctctggaaacgtattcc 35974097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 18359232 - 18359284
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    |||| |||| |||||||||||| ||| |||||| |||||||||||| ||||||    
T  18359232 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattcc 18359284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 36603696 - 36603644
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    |||| |||| |||||||||||| ||| |||||| |||||||||||| ||||||    
T  36603696 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattcc 36603644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 55967067 - 55967007
Alignment:
Q  16 ttttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctc 76  Q
    ||||||||||||||||||  ||||| ||||||| | ||||  ||||||| |||||||||||    
T  55967067 ttttgtccacaagatggagatatctctggaaacatgttccagcccttattttgcattcctc 55967007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42602935 - 42602730
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttt 100  Q
    |||||||||||||||| ||||||| ||||||||||  | | |||||||||||||| || ||||||||| |||||||  | ||||||||| | |||  |||    
T  42602935 ccgttcaaacttgcatcttgtccaaaagatggaagcttatgtggaaacgtattcctactcttatattggattcctcaaactttcccactgtgaagcattt 42602836  T
Q  101 tgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctc 200  Q
    | |   |||  | ||||||||||||||||||||||||| |||| || || || |||||||||||||| || || |||||| |||  |||| | ||||||     
T  42602835 ttccatatttgtgtctaagattttgactcttcgtgatacctcaactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactcctt 42602736  T
Q  201 aaaaag 206  Q
    ||||||    
T  42602735 aaaaag 42602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 35335885 - 35335953
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattgcat 71  Q
    |||||||||||| ||||||||| |||||||||  |||| |||||||||||||| || ||||||||||||    
T  35335885 gttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattccaacacttatattgcat 35335953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32413658 - 32413712
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  32413658 ccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 6844163 - 6844228
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatattg 68  Q
    ||||||||||||||| | |||| |||||||||  |||||||||||| | ||||||| |||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactcttatattg 6844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 44501493 - 44501441
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    ||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  44501493 gttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33844334 - 33844280
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    ||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  33844334 ccgttcaaacttgcattttgtccaccagatggaaacatctctggaaacgtattcc 33844280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 33840340 - 33840288
Alignment:
Q  3 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 55  Q
    |||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  33840340 gttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 33840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
Q  114 tctaagattttgactcttcgtgatagctcagcttcattg 152  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33840223 tctaagattttgactcttcgtgataactcagctgcattg 33840185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
Q  114 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat 176  Q
    ||||||||||||||||||||||||| ||||||| || || ||  ||||||| |||| ||||||    
T  33844215 tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat 33844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43864103 - 43864058
Alignment:
Q  1 ccgttcaaacttgcattttgtccacaagatggaagtatctttggaa 46  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||    
T  43864103 ccgttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 43875269 - 43875208
Alignment:
Q  2 cgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 63  Q
    ||||||||||||||||||||||| ||||||||   ||||||||||  || ||||||| ||||    
T  43875269 cgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactctta 43875208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University