View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_low_2 (Length: 560)
Name: NF16776_low_2
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Original strand, 3106602 - 3107143
Alignment:
| Q |
7 |
ctttctaatattattggaacaggagtacaagtattaagtaatcagtaaataagtgaataagttatctctgatgacttttattttattttgcattaaacaa |
106 |
Q |
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| T |
3106602 |
ctttctaatattattggaacaggagtacaagtattaagtaaacagtaaataagtgaataagttatctctgatgacttttattttattttgcattaaacaa |
3106701 |
T |
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| Q |
107 |
tagtagtacttgtactactactactactctgcttgaaccgatgaactgcttttgttttagttgaatggatggaggggtcaataatctgtgtaacagtcag |
206 |
Q |
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| T |
3106702 |
tagtagtacttgtactactactactactctgcttgaaccgatgaactgcttttgttttagttgaatggatggaggggtcaataatctgtgtaacagtcag |
3106801 |
T |
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| Q |
207 |
tcctttggcctaatatgtcgctgaaatgaagaaacaaaaacgtgaatatcaatgcaaaatgagaaaagggacaaagttggttgcttctttcttggggaac |
306 |
Q |
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| T |
3106802 |
tcctttggcctaatatgtcgctgaaatgaagaaacaaaaacgtgaatatcaatgcaaaatgagaaaagtgacaaagttggttgcttctttcttggggaac |
3106901 |
T |
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| Q |
307 |
tccaagctcgatgcccatatatatttaccaatctgctctgctcgtgagataggtttaactttatttgcatcacaagtcacacgcttaaccatatgtgtct |
406 |
Q |
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| T |
3106902 |
tccaagctcgatgcccatatatatttaccaatctgctctgctcgtgagataggtttaactttatttgcatcacaagtcacacgcttaaccatatgtgtct |
3107001 |
T |
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| Q |
407 |
tagtgctttgtgccataaatttccatgtgaccctgtctacgtctctctgtgggttgacgtagtaactctataccgagcacctaaacaatattccccaacg |
506 |
Q |
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| T |
3107002 |
tagtgctttgtgccataaatttccatgtgaccctgtctacgtctctctgtgggttgacgtagtaactctataccgagcacctaaacaatattccccaacg |
3107101 |
T |
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| Q |
507 |
accatcaatcaatctacattattaagctagccattgaaagta |
548 |
Q |
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| T |
3107102 |
accatcaatcaatctacattattaagctagccattgaaagta |
3107143 |
T |
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