View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_low_5 (Length: 425)
Name: NF16776_low_5
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 30708246 - 30708655
Alignment:
| Q |
1 |
cagatttatgtgattcaacccttcttgctatgtcttcgtgaacgctaacatatatgttgtatactatgattttttgagccgtcactataaacctccatag |
100 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
30708246 |
cagatttatgtgattcaacccttcttgctatgcctacgtgaacgctaacatatatgttgtatactatggttttttgagccgtcactataaacctccacag |
30708345 |
T |
|
| Q |
101 |
gtatatgtcatttttcttctggtgataacttattaattatttcaaacaagattacaataatgtaacccaacttaagtgtagcactctacaatactcccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708346 |
gtatatgtcatttttcttctggtgataacttattaattatttcaaacaagattacaataatgtaacccaacttaagtgtagcactctacaatactcccct |
30708445 |
T |
|
| Q |
201 |
aaagagtact----------taacactcacatatgaaatgactcatttctccaagacatgttggagatgatgcctcgactctccacatatgatctctcaa |
290 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30708446 |
aaagagtacttaaagaatgataacactcacatatgaaatgactcatttctccaagacatgttggagatgatgcctcgactctccacatatgatctcccaa |
30708545 |
T |
|
| Q |
291 |
aaacgagaaagcaccatttctctatatgatcaactaagatttgtggtacttcaactcttcatgagtctctcacaagagagtgtctttcactcgtgtatct |
390 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30708546 |
aaacgagaaagcacc--------atatgatcaactaagatttgtggtacttcaactcttcatgagtctcttacaagagagtgtctttcactcgtgtatct |
30708637 |
T |
|
| Q |
391 |
aacttagtggatattaac |
408 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
30708638 |
aacttagtggatattaac |
30708655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 1933364 - 1933334
Alignment:
| Q |
88 |
taaacctccataggtatatgtcatttttctt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
1933364 |
taaacctccataggtatatgtcatttttctt |
1933334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 1939765 - 1939735
Alignment:
| Q |
88 |
taaacctccataggtatatgtcatttttctt |
118 |
Q |
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|
||||||||||||||||||||||||||||||| |
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|
| T |
1939765 |
taaacctccataggtatatgtcatttttctt |
1939735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 43218772 - 43218724
Alignment:
| Q |
79 |
ccgtcactataaacctccataggtatatgtcatttttcttctggtgata |
127 |
Q |
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|||||||||||||||||| |||||||||| || ||||||| | |||||| |
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| T |
43218772 |
ccgtcactataaacctccgtaggtatatggcaattttcttgtagtgata |
43218724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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