View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_low_6 (Length: 398)
Name: NF16776_low_6
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 91 - 274
Target Start/End: Complemental strand, 24511992 - 24511809
Alignment:
| Q |
91 |
tatcttatagtatgttatccaccaaaattcaaataataaaaatagagcaactaacctctccattcaaaaaagaatgactaacctcttaaaatgtatggaa |
190 |
Q |
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| T |
24511992 |
tatcttatagtatgttatccaccaaaatccaaataataaaaatagagcaactaacttctctattcaacaaagaataactaacctctcaaaatgtatgaaa |
24511893 |
T |
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| Q |
191 |
tttcatacactcatggtcagaaaaattaaaagtttagtaattcgtttaacgtcaagacctaaaatcataaacaactatctcata |
274 |
Q |
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| T |
24511892 |
tttcatacactcatggtcagaaaaattaaaattttagtaattcgtttaacgtcaagacctaaaatcataaacaactatctcata |
24511809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 24511808 - 24511678
Alignment:
| Q |
251 |
aaaatcataaacaactatctcatattatgaatcatgtataaactccagcaaatgaattaaattatgttggcagtttcttggccacaac-annnnnnnaac |
349 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |
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| T |
24511808 |
aaaatcgtaaacaactatctcatattatgaatcaagtataaactccagcaaatgaattaaattatgtcggcagtttcttggccacaacaatttttttaac |
24511709 |
T |
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| Q |
350 |
aactaaaaagttattgagataacacagaacc |
380 |
Q |
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| T |
24511708 |
aactaaaaagttattgagataacgcagaacc |
24511678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 24515132 - 24515062
Alignment:
| Q |
29 |
gaaatagacatataatttttgtaatcacacaaaaaatcatggatggtaaatgattctcttat-tatcttat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
24515132 |
gaaatagacatataatttttgtaatcacacaaaaaatcaaggatggtaaatgattctcttatctatcttat |
24515062 |
T |
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