View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16776_low_9 (Length: 334)
Name: NF16776_low_9
Description: NF16776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16776_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 30687848 - 30687546
Alignment:
| Q |
19 |
catgacacggatacggttatttgtttcttttccctcattaattgtcataggtaattgttggaaataattgtcattcaaatgtttggccatgttctggcag |
118 |
Q |
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| T |
30687848 |
catgacacggatacggttatttgtttcttttccctcattaatcgtcataggtaattgttggaaataattgtcattgaaatgtttggccatgttctggcag |
30687749 |
T |
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| Q |
119 |
ggattatgatgggaaagtcacgcctgaggaggttgtatccgctgctatgtatctgaaggacactttgggaaaagaaggaattcaagaacttatcagcaac |
218 |
Q |
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| T |
30687748 |
ggattatgatgggaaagtgacgcctgaggaggttgtatccgctgctatgtatctgaaggacactttgggaaaagaaggaattcaagaacttatcagcaac |
30687649 |
T |
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| Q |
219 |
ctttcaaaggatattggttagttcttctgtcaatttcctccttactctcatattgcaccaagagttagcaaatatgaatgtcacttatcaagtattaatg |
318 |
Q |
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| T |
30687648 |
ctttcaaaagatattggttag---ttctgtcaatttcctcctaactctcatattgcaccaagagttagcaaatatgaatgtcacttatcaagtattaatg |
30687552 |
T |
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| Q |
319 |
tctctg |
324 |
Q |
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| |||| |
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| T |
30687551 |
tttctg |
30687546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 36745457 - 36745354
Alignment:
| Q |
120 |
gattatgatgggaaagtcacgcctgaggaggttgtatccgctgctatgtatctgaaggacactttgggaaaagaaggaattcaagaacttatcagcaacc |
219 |
Q |
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||||||||||||||||| || ||||||||||| | ||| ||||| ||||| ||||| | || ||||| |||||||| | |||||||| ||||||| | |
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| T |
36745457 |
gattatgatgggaaagtaactcctgaggaggtagcatcggctgcaatgtacttgaagaatacattggggaaagaaggcgtccaagaactcgtcagcaatc |
36745358 |
T |
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| Q |
220 |
tttc |
223 |
Q |
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|||| |
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| T |
36745357 |
tttc |
36745354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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