View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16777_high_6 (Length: 265)
Name: NF16777_high_6
Description: NF16777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16777_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 27926839 - 27927073
Alignment:
| Q |
18 |
aacaaaagcgcttttggaatcgtaaatgaaacctacttatggcatgtttggtttagtcgtgggaagggcttaacccacatctcgaaagaagctagaattc |
117 |
Q |
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| T |
27926839 |
aacaaaagcgcttttggaatcgtaaatgaaacctacttatggcatgtttggtttagtcgtgggaagggcttaacccatgtctcgaaagaagctagaattc |
27926938 |
T |
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| Q |
118 |
ctagcttctcattccacagccaaatagtgcatcgggacgcgannnnnnngttgtcacggatttgaaactccacaccaaacacacgcttaaccaaccagct |
217 |
Q |
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| T |
27926939 |
ctagcttctcattccacagccaattagtgcatcgggacgcgatttttttgttgtcacggatttgaaactccacaccaaacacacgcttaaccaaccagct |
27927038 |
T |
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| Q |
218 |
atgcccataagattttgtttttacttttattgttca |
253 |
Q |
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| T |
27927039 |
atgcccatcagattatgtttttac-tttattgttca |
27927073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 4237442 - 4237536
Alignment:
| Q |
61 |
atgtttggtttagtcgtgggaagggcttaacccacatctcgaaagaagctagaattcctagcttctcattccacagccaaatagtgcatcgggac |
155 |
Q |
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| T |
4237442 |
atgtttggtttagtggtaggaagggcttaacgcacgttcagagtaaagctggaattcctaacttctctttccacgaccaaatagtgcatcgggac |
4237536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 40154365 - 40154278
Alignment:
| Q |
62 |
tgtttggtttagtcgtgggaagggcttaacccacatctcgaaagaagctagaattcct-agcttctcattccacagccaaatagtgcat |
149 |
Q |
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| T |
40154365 |
tgtttggtttagtggtgggaagggcttaacacacgt-tggagtgaagctggaatttctcagcttctcatttcacggccaaaaagtgcat |
40154278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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