View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16777_high_7 (Length: 239)

Name: NF16777_high_7
Description: NF16777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16777_high_7
NF16777_high_7
[»] chr3 (11 HSPs)
chr3 (14-221)||(25795532-25795735)
chr3 (13-47)||(3328487-3328521)
chr3 (13-47)||(3716133-3716167)
chr3 (13-47)||(26298910-26298944)
chr3 (13-47)||(40592914-40592948)
chr3 (13-45)||(8370618-8370650)
chr3 (13-45)||(27026869-27026901)
chr3 (13-45)||(27038214-27038246)
chr3 (60-92)||(28531019-28531051)
chr3 (13-45)||(35925406-35925438)
chr3 (13-45)||(48438138-48438170)
[»] chr8 (4 HSPs)
chr8 (51-88)||(11492038-11492075)
chr8 (13-52)||(9765961-9766000)
chr8 (13-47)||(26403371-26403405)
chr8 (59-88)||(33727838-33727867)
[»] scaffold0488 (1 HSPs)
scaffold0488 (178-222)||(2356-2400)
[»] chr6 (7 HSPs)
chr6 (11-47)||(5572735-5572771)
chr6 (13-47)||(4629875-4629909)
chr6 (13-47)||(10077306-10077340)
chr6 (13-45)||(5017609-5017641)
chr6 (13-45)||(18232769-18232801)
chr6 (13-45)||(22963624-22963656)
chr6 (13-45)||(23824737-23824769)
[»] scaffold0148 (1 HSPs)
scaffold0148 (13-47)||(10651-10685)
[»] chr7 (3 HSPs)
chr7 (13-47)||(4796808-4796842)
chr7 (13-47)||(20284011-20284045)
chr7 (13-47)||(29159725-29159759)
[»] chr5 (4 HSPs)
chr5 (13-47)||(19588668-19588702)
chr5 (13-46)||(28832182-28832215)
chr5 (13-45)||(12084317-12084349)
chr5 (60-88)||(32670593-32670621)
[»] chr4 (5 HSPs)
chr4 (13-47)||(25862163-25862197)
chr4 (13-42)||(16624150-16624179)
chr4 (13-45)||(5269332-5269364)
chr4 (13-45)||(10047303-10047335)
chr4 (13-45)||(54867108-54867140)
[»] chr2 (10 HSPs)
chr2 (13-47)||(8039982-8040016)
chr2 (13-47)||(14699135-14699169)
chr2 (13-47)||(31055964-31055998)
chr2 (13-47)||(33118058-33118092)
chr2 (13-47)||(34682475-34682509)
chr2 (59-88)||(21195641-21195670)
chr2 (13-45)||(8390290-8390322)
chr2 (13-45)||(17865127-17865159)
chr2 (13-45)||(20522144-20522176)
chr2 (13-45)||(23078612-23078644)
[»] chr1 (8 HSPs)
chr1 (13-47)||(775594-775628)
chr1 (13-47)||(19072849-19072883)
chr1 (13-47)||(19120739-19120773)
chr1 (13-47)||(27104513-27104547)
chr1 (13-47)||(47098965-47098999)
chr1 (13-47)||(47102982-47103016)
chr1 (13-45)||(29651735-29651767)
chr1 (15-47)||(32889360-32889392)
[»] scaffold0101 (1 HSPs)
scaffold0101 (55-84)||(43301-43330)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 25795735 - 25795532
Alignment:
Q  14 attattcttgtggtgttgctctacacttagattttggttctcttcagtgtcaatttggatgggctaatttagcttattcnnnnnnnnnnnnnntaataag 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||               || |||    
T  25795735 attatgcttgtggtgttgctctacacttagattttggttctcttcggtgtcaatttggatgggctaatttagcttattcaaaaaaaaaaa----aaaaag 25795640  T
Q  114 tagaaggaaatttgtaaaatctagccagggttcaagtatcaaaacaatgtcaggtttgtgtaacttaatcaacctcttgagagccaatcttgaagtggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795639 tagaaggaaatttgtaaaatctagccagggttcaagtatcaaaacaatgtcaggtttgtgtaacttaatcaacctcttgagagccaatcttgaagtggaa 25795540  T
Q  214 ttggctat 221  Q
    ||||||||    
T  25795539 ttggctat 25795532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 3328487 - 3328521
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  3328487 gattatgcttgtggtgttgctctacacttagattt 3328521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 3716133 - 3716167
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  3716133 gattatgcttgtggtgttgctctacacttagattt 3716167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 26298944 - 26298910
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  26298944 gattatgcttgtggtgttgctctacacttagattt 26298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 40592914 - 40592948
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  40592914 gattatgcttgtggtgttgctctacacttagattt 40592948  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8370618 - 8370650
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  8370618 gattatgcttgtggtgttgctctacacttagat 8370650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 27026901 - 27026869
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  27026901 gattatgcttgtggtgttgctctacacttagat 27026869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 27038246 - 27038214
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  27038246 gattatgcttgtggtgttgctctacacttagat 27038214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 28531051 - 28531019
Alignment:
Q  60 gtgtcaatttggatgggctaatttagcttattc 92  Q
    |||||||||||| ||||||||||||||||||||    
T  28531051 gtgtcaatttgggtgggctaatttagcttattc 28531019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 35925438 - 35925406
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  35925438 gattatgcttgtggtgttgctctacacttagat 35925406  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 48438170 - 48438138
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  48438170 gattatgcttgtggtgttgctctacacttagat 48438138  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 11492075 - 11492038
Alignment:
Q  51 ttctcttcagtgtcaatttggatgggctaatttagctt 88  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11492075 ttctcttcagtgtcaatttgggtgggctaatttagctt 11492038  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 9765961 - 9766000
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattttggtt 52  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  9765961 gattatgcttgtggtgttgctctacacttagatttaggtt 9766000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 26403371 - 26403405
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  26403371 gattatgcttgtggtgttgctctacacttagattt 26403405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 33727867 - 33727838
Alignment:
Q  59 agtgtcaatttggatgggctaatttagctt 88  Q
    ||||||||||||||||||||||||||||||    
T  33727867 agtgtcaatttggatgggctaatttagctt 33727838  T

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Target: scaffold0488 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2356 - 2400
Alignment:
Q  178 ttaatcaacctcttgagagccaatcttgaagtggaattggctatt 222  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||    
T  2356 ttaatcaaccttttgagagccaatcttgagggggaattggctatt 2400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 5572735 - 5572771
Alignment:
Q  11 tagattattcttgtggtgttgctctacacttagattt 47  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5572735 tagattatgcttgtggtgttgctctacacttagattt 5572771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 4629909 - 4629875
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  4629909 gattatgcttgtggtgttgctctacacttagattt 4629875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 10077306 - 10077340
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  10077306 gattatgcttgtggtgttgctctacacttagattt 10077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 5017609 - 5017641
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  5017609 gattatgcttgtggtgttgctctacacttagat 5017641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18232801 - 18232769
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  18232801 gattatgcttgtggtgttgctctacacttagat 18232769  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 22963656 - 22963624
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  22963656 gattatgcttgtggtgttgctctacacttagat 22963624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 23824737 - 23824769
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  23824737 gattatgcttgtggtgttgctctacacttagat 23824769  T

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Target: scaffold0148 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 10685 - 10651
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  10685 gattatgcttgtggtgttgctctacacttagattt 10651  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 4796808 - 4796842
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  4796808 gattatgcttgtggtgttgctctacacttagattt 4796842  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 20284045 - 20284011
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  20284045 gattatgcttgtggtgttgctctacacttagattt 20284011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 29159759 - 29159725
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  29159759 gattatgcttgtggtgttgctctacacttagattt 29159725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 19588702 - 19588668
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  19588702 gattatgcttgtggtgttgctctacacttagattt 19588668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 28832215 - 28832182
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagatt 46  Q
    |||||| |||||||||||||||||||||||||||    
T  28832215 gattatgcttgtggtgttgctctacacttagatt 28832182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12084317 - 12084349
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  12084317 gattatgcttgtggtgttgctctacacttagat 12084349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 32670621 - 32670593
Alignment:
Q  60 gtgtcaatttggatgggctaatttagctt 88  Q
    |||||||||||||||||||||||||||||    
T  32670621 gtgtcaatttggatgggctaatttagctt 32670593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 25862163 - 25862197
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  25862163 gattatgcttgtggtgttgctctacacttagattt 25862197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 16624150 - 16624179
Alignment:
Q  13 gattattcttgtggtgttgctctacactta 42  Q
    ||||||||||||||||||||||||||||||    
T  16624150 gattattcttgtggtgttgctctacactta 16624179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 5269332 - 5269364
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  5269332 gattatgcttgtggtgttgctctacacttagat 5269364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 10047335 - 10047303
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  10047335 gattatgcttgtggtgttgctctacacttagat 10047303  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 54867140 - 54867108
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  54867140 gattatgcttgtggtgttgctctacacttagat 54867108  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 8040016 - 8039982
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  8040016 gattatgcttgtggtgttgctctacacttagattt 8039982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 14699135 - 14699169
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  14699135 gattatgcttgtggtgttgctctacacttagattt 14699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 31055998 - 31055964
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  31055998 gattatgcttgtggtgttgctctacacttagattt 31055964  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 33118092 - 33118058
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  33118092 gattatgcttgtggtgttgctctacacttagattt 33118058  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 34682475 - 34682509
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  34682475 gattatgcttgtggtgttgctctacacttagattt 34682509  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 21195670 - 21195641
Alignment:
Q  59 agtgtcaatttggatgggctaatttagctt 88  Q
    ||||||||||||||||||||||||||||||    
T  21195670 agtgtcaatttggatgggctaatttagctt 21195641  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8390290 - 8390322
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  8390290 gattatgcttgtggtgttgctctacacttagat 8390322  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 17865159 - 17865127
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  17865159 gattatgcttgtggtgttgctctacacttagat 17865127  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 20522176 - 20522144
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  20522176 gattatgcttgtggtgttgctctacacttagat 20522144  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 23078612 - 23078644
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  23078612 gattatgcttgtggtgttgctctacacttagat 23078644  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 775628 - 775594
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  775628 gattatgcttgtggtgttgctctacacttagattt 775594  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 19072883 - 19072849
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  19072883 gattatgcttgtggtgttgctctacacttagattt 19072849  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 19120773 - 19120739
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  19120773 gattatgcttgtggtgttgctctacacttagattt 19120739  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 27104513 - 27104547
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  27104513 gattatgcttgtggtgttgctctacacttagattt 27104547  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 47098965 - 47098999
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  47098965 gattatacttgtggtgttgctctacacttagattt 47098999  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 47102982 - 47103016
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagattt 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  47102982 gattatacttgtggtgttgctctacacttagattt 47103016  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 29651767 - 29651735
Alignment:
Q  13 gattattcttgtggtgttgctctacacttagat 45  Q
    |||||| ||||||||||||||||||||||||||    
T  29651767 gattatgcttgtggtgttgctctacacttagat 29651735  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 32889392 - 32889360
Alignment:
Q  15 ttattcttgtggtgttgctctacacttagattt 47  Q
    |||| ||||||||||||||||||||||||||||    
T  32889392 ttatacttgtggtgttgctctacacttagattt 32889360  T

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Target: scaffold0101 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 43330 - 43301
Alignment:
Q  55 cttcagtgtcaatttggatgggctaattta 84  Q
    ||||||||||||||||||||||||||||||    
T  43330 cttcagtgtcaatttggatgggctaattta 43301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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