View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16777_low_1 (Length: 608)
Name: NF16777_low_1
Description: NF16777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16777_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Complemental strand, 32260404 - 32259818
Alignment:
| Q |
9 |
gaacaatatccaagaactaaatcccatgattgagacttttaattcaggagtgtgttcccccactatacggtgtgatactatgaagaaaaattgtatacag |
108 |
Q |
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| T |
32260404 |
gaacaatatccaagaactaaatcccatgattgagagttttaattcaggagtgtgttcccccactatacggtgtgatactatgaagaaaaattgtatacag |
32260305 |
T |
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| Q |
109 |
tcattgagtgtggctgcagacagtgcaatctgtcctaattcagttgctatgaggttaagttctatcaaagcatcggacactgcagggaaattactgaatg |
208 |
Q |
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| T |
32260304 |
tcattgagtgtggctgcagacagtgcaatctgtcctaattcagttgctatgaggttaagttctatcaaagcatcggacactgcagggaaattactgaatg |
32260205 |
T |
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| Q |
209 |
ctatcgtagcacttaatgctgtacgcgaagcttctattttgatatgagggttgtgtggtacataaaaaacttttagaagtaatgataaaaccgtaaaaga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
32260204 |
ctatcgtagcacttaatgctgtacgcgaagcttctattttgatatgagggttgtgtggtacataaaaaactttcaggagtaatgataaaaccgaaaaaga |
32260105 |
T |
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| Q |
309 |
agccatgaggggtaatattccaagtaggctagtactttttgctgctcttatagtcattagtagatccattttcagtgcaatcaagaacaaaaagtatata |
408 |
Q |
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| T |
32260104 |
agccatgaggggtaatattccaagtaggctagtactttttgctgctcttatagtcattagtagatccattttcagtgcaatcaagaacaaaaagtatata |
32260005 |
T |
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| Q |
409 |
gctccgagtaatgacaacgctgataaaacatcagattgtcttgggggaaacaaggccttccaataaatctcgttcctccctagaagtgatggccccaaca |
508 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32260004 |
gctccgagtaatgacaacactgataaaacatcagattgtcttgggggaaacaaggccttccaataaatctcgttcctccctagaagtgatggccccaaaa |
32259905 |
T |
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| Q |
509 |
taattccaccctgcacacatttttcacttaaatataaatttaaagactattatcagatataaaagttagttataccagtttagtttg |
595 |
Q |
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| T |
32259904 |
taattccaccctgcacacatttttcacttaaatataaatttaaagactattatcagatataaaagttagttataccagtttagtttg |
32259818 |
T |
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