View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16777_low_2 (Length: 592)

Name: NF16777_low_2
Description: NF16777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16777_low_2
NF16777_low_2
[»] chr2 (1 HSPs)
chr2 (1-575)||(12689715-12690286)
[»] chr5 (4 HSPs)
chr5 (238-422)||(20678556-20678740)
chr5 (95-218)||(26863445-26863569)
chr5 (33-94)||(20679805-20679866)
chr5 (33-100)||(23421574-23421640)
[»] chr8 (6 HSPs)
chr8 (298-442)||(14367702-14367846)
chr8 (269-330)||(18974753-18974814)
chr8 (363-465)||(18974819-18974925)
chr8 (36-92)||(2236-2290)
chr8 (33-92)||(14673570-14673628)
chr8 (34-90)||(25548139-25548193)
[»] chr6 (3 HSPs)
chr6 (298-442)||(19575709-19575853)
chr6 (37-90)||(4282658-4282711)
chr6 (34-90)||(22622465-22622519)
[»] chr3 (3 HSPs)
chr3 (269-334)||(19806867-19806932)
chr3 (363-465)||(19806760-19806866)
chr3 (33-90)||(20012350-20012405)
[»] chr1 (3 HSPs)
chr1 (95-218)||(19749769-19749893)
chr1 (33-94)||(20963514-20963576)
chr1 (33-92)||(15157945-15158002)
[»] chr7 (3 HSPs)
chr7 (269-330)||(5331060-5331121)
chr7 (363-465)||(5330949-5331055)
chr7 (33-92)||(550543-550601)
[»] scaffold0013 (1 HSPs)
scaffold0013 (36-92)||(135652-135706)
[»] chr4 (1 HSPs)
chr4 (36-92)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 12689715 - 12690286
Alignment:
Q  1 cctaattctaattcgattattgtacttttaacaagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaataaacc 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||    
T  12689715 cctaattctaatttgattattgtacttttaacaagaggtaaaactaaccttgaccgtgttttctgaatcacgaatcgtgatttggaaaccctaa---acc 12689811  T
Q  101 taatcaattataccgaggtgatcatgaagttgatgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatctacggagg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  12689812 taatcaattataccgaggtgatcatgacgttgatgtcgcagccgcaaaccccatcactggtgatgcggccgagaaacaatatcaacgtcatctacggagg 12689911  T
Q  201 catcgacaaccatgtgcaccattattcatacgttcaggtcctcaggaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaaagccacaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12689912 catcgacaaccatgtgcaccattattcatacgttcaggtcctcatgaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaaagccgcaa 12690011  T
Q  301 gcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaaagc 400  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12690012 gcaatcagactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtcgttcatcgatgtttgaaaagc 12690111  T
Q  401 ttcaaaataagtgtgttcacatgtttgagacatcggcatatacgataaaagttcctctattattttgcatcgtttcaattaaatatataatcatacacaa 500  Q
    || |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12690112 tttaaaataagtgtgttcacatgttggagacatcagcgtatacgataaaagttcctctattattttgcatcgtttcaattaaatatataatcatacacaa 12690211  T
Q  501 ttaactgttatgagaatagctcctgtatgccatctcaatagccacgattggtaaaacgtttccaaacctccaaat 575  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12690212 ttaattgttatgagaatagctcctgtatgccatctcaatagccacgattggtaaaacgtttccaaacctccaaat 12690286  T

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Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 20678740 - 20678556
Alignment:
Q  238 gtcctcaggaaggtctacacacgaaaatccatatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttttgctcat 337  Q
    ||||||| |||||| ||||| |||||||||||||||||| || |||||||||||||||| |||| ||||| |||||||||||| ||||||||| ||||||    
T  20678740 gtcctcacgaaggtgtacacgcgaaaatccatatcatcgtcgttgctagaaagaaagccgcaaggaatcagactcaaagaccatataagttttcgctcat 20678641  T
Q  338 attttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacat 422  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  20678640 attttgtaggtttcaaaggaaggcatcattatcatgattctcgttcattgatgtttgaaaagcttcaaaataagtgtgttcacat 20678556  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 26863569 - 26863445
Alignment:
Q  95 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 193  Q
    ||||||||||||||||| |||||| |||||||  ||||| ||||||||| |||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  26863569 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagctgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 26863470  T
Q  194 acggaggcatcgacaaccatgtgca 218  Q
    | |||||||||||||||||||||||    
T  26863469 atggaggcatcgacaaccatgtgca 26863445  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 20679866 - 20679805
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaa 94  Q
    ||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||    
T  20679866 aagaggtaaaactaaccttgaccacattttctgaatctcaaatcgtgacttggaaaccctaa 20679805  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 23421574 - 23421640
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccctaataaacc 100  Q
    |||||||||||| |||||||||| ||||| ||||||| | |||| ||||||||||||||||| |||||    
T  23421574 aagaggtaaaacaaaccttgaccacgttt-ctgaatcgcaaatcatgatttggaaaccctaagaaacc 23421640  T

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Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 298 - 442
Target Start/End: Original strand, 14367702 - 14367846
Alignment:
Q  298 caagcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaa 397  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||  ||    
T  14367702 caagcaatcagactcaaagaccagataagttttcgctcatattttgtcggtttcaaaggatggcatcattatcatgattgtcgttcattgatattttgaa 14367801  T
Q  398 agcttcaaaataagtgtgttcacatgtttgagacatcggcatata 442  Q
    ||||||||||||| ||||||||||| || |||||||  |||||||    
T  14367802 agcttcaaaataaatgtgttcacattttggagacattagcatata 14367846  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 18974753 - 18974814
Alignment:
Q  269 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttt 330  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18974753 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttt 18974814  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 18974819 - 18974925
Alignment:
Q  363 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacatcggc----atatacgataaaagttcctct 458  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||  ||    ||||| |||||||||||||||    
T  18974819 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacattagcatatatatatgataaaagttcctct 18974918  T
Q  459 attattt 465  Q
    |||||||    
T  18974919 attattt 18974925  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 2290 - 2236
Alignment:
Q  36 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 92  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  2290 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 2236  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 14673570 - 14673628
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatc-gtgatttggaaaccct 92  Q
    |||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||    
T  14673570 aagaggtaaaactaacctcgaccacg-tttctgaatca-gaatctgtgatttggaaaccct 14673628  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 25548139 - 25548193
Alignment:
Q  34 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 90  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  25548139 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 25548193  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 298 - 442
Target Start/End: Complemental strand, 19575853 - 19575709
Alignment:
Q  298 caagcaatcatactcaaagaccagataagtttttgctcatattttgtcggtttcaaaggaaggcatcattatcatgattgtagttcatcgatgtttgaaa 397  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||| |||||| ||| |||  ||    
T  19575853 caagcaatcagactcaaagaccagataagttttcgctcatattttgaagctttcaaaggaaggcatcattatcatgattgtcgttcattgatattttgaa 19575754  T
Q  398 agcttcaaaataagtgtgttcacatgtttgagacatcggcatata 442  Q
    ||||||||||||| ||||||||||| || |||||||  |||||||    
T  19575753 agcttcaaaataaatgtgttcacattttggagacattagcatata 19575709  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 4282711 - 4282658
Alignment:
Q  37 ggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 90  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  4282711 ggtaaaactaaccttgaccacgttttctggatcacaaatcgtgatttggaaacc 4282658  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 22622519 - 22622465
Alignment:
Q  34 agaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 90  Q
    ||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  22622519 agaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 22622465  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 19806932 - 19806867
Alignment:
Q  269 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttttgct 334  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  19806932 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttttgct 19806867  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 19806866 - 19806760
Alignment:
Q  363 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacatcggc----atatacgataaaagttcctct 458  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||  ||    ||||| |||||||||||||||    
T  19806866 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacattagcatatatatatgataaaagttcctct 19806767  T
Q  459 attattt 465  Q
    |||||||    
T  19806766 attattt 19806760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 20012405 - 20012350
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaacc 90  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||    
T  20012405 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaacc 20012350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 19749769 - 19749893
Alignment:
Q  95 taaacctaatcaattataccgaggtgatcatgaagttga-tgtcgcagccgcaaaccctatcacttgtgatgcggccgagaaacaatatcaacgtcatct 193  Q
    ||||||||||||||||| |||||| |||||||  ||||| |||||||||||||||||| |||  |  |||||| ||| |||| |||||  ||||||||||    
T  19749769 taaacctaatcaattatgccgaggggatcatggcgttgaatgtcgcagccgcaaaccccatcgttgatgatgccgccaagaagcaatacgaacgtcatct 19749868  T
Q  194 acggaggcatcgacaaccatgtgca 218  Q
     ||||||||||||||||||||||||    
T  19749869 gcggaggcatcgacaaccatgtgca 19749893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 20963576 - 20963514
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcac-gaatcgtgatttggaaaccctaa 94  Q
    ||||||||||| ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  20963576 aagaggtaaaattaaccttgaccacgttttctgaatcgcaaaatcttgatttggaaaccctaa 20963514  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15158002 - 15157945
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 92  Q
    |||||||||||||||||| |||| || |||||||||||  ||||||||||||||||||||    
T  15158002 aagaggtaaaactaacctcgaccacg-tttctgaatca-aaatcgtgatttggaaaccct 15157945  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 5331121 - 5331060
Alignment:
Q  269 tatcatcgccgctgctagaaagaaagccacaagcaatcatactcaaagaccagataagtttt 330  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5331121 tatcatcgccgctgctagaaagaaagccgcaagcaatcaaactcaaagaccagataagtttt 5331060  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 5331055 - 5330949
Alignment:
Q  363 tcattatcatgattgtagttcatcgatgtttgaaaagcttcaaaataagtgtgttcacatgtttgagacatcggc----atatacgataaaagttcctct 458  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||||| || |||||||  ||    ||||| |||||||||||||||    
T  5331055 tcattatcatgattgtcgttcattgatgtttggaaagcttcaaaataaatgcgttcacattttggagacattagcatatatatatgataaaagttcctct 5330956  T
Q  459 attattt 465  Q
    |||||||    
T  5330955 attattt 5330949  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 550601 - 550543
Alignment:
Q  33 aagaggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 92  Q
    |||| |||||||||||||||||| || |||||||||| | |||||||||| |||||||||    
T  550601 aagacgtaaaactaaccttgaccacg-tttctgaatcgcaaatcgtgattcggaaaccct 550543  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 135706 - 135652
Alignment:
Q  36 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 92  Q
    ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  135706 aggtaaaactaacctcgaccacgttt-ctgaatcaa-aatcgtgatttggaaaccct 135652  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 722943 - 722998
Alignment:
Q  36 aggtaaaactaaccttgaccgcgttttctgaatcacgaatcgtgatttggaaaccct 92  Q
    |||||||||||||||||||| || |||| ||||||| |||||||||| | |||||||    
T  722943 aggtaaaactaaccttgaccacg-tttccgaatcacaaatcgtgattcgtaaaccct 722998  T

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