View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16777_low_6 (Length: 324)
Name: NF16777_low_6
Description: NF16777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16777_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 57 - 267
Target Start/End: Original strand, 52858636 - 52858846
Alignment:
| Q |
57 |
ctgctgttgctgctgggtagagtcatcagagaaataatgttgtcccgttccaggaagaaggcgtgatcctcctatgatggcatccaccgtggtgttgagg |
156 |
Q |
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| T |
52858636 |
ctgctgttgctgctgggtagagtcatcagagaaataatgttgtcccgttccaggaagaaggcgtgatcctcctatgatggcatccaccgtggtgttgagg |
52858735 |
T |
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| Q |
157 |
agagagctaggtgctgaaccataccttgtgagacccgtttgactgatggagctctgttgttgctgagacgaagaggaagaagaagaagccgatgaggaag |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858736 |
agagagctaggtgctgaaccataccttgtgagacccgtttgactgatggagctctgttgttgctgagacgaagaggaagaagaagaagccgatgaggaag |
52858835 |
T |
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| Q |
257 |
gtggacgatac |
267 |
Q |
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| T |
52858836 |
gtggacgatac |
52858846 |
T |
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