View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16778_high_11 (Length: 269)
Name: NF16778_high_11
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_high_11 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 38931948 - 38931685
Alignment:
| Q |
6 |
agaagaagaaactaacagcatgctcagtggttttgattcacgtttcttgggacaagttttgaaagtgaaagaaagtataattagaaagcttcaatctcca |
105 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38931948 |
agaagaagaaactaacaacatgttcagtggttttgattcacgtttcttgggacaagttttgaaagtgaaagaaagtataattagaaagcttcaatctcaa |
38931849 |
T |
|
| Q |
106 |
gatgaagaacatagaaagcaccaaattatacatgttaaaggaggtcttagtattataaggccacctttggaattggaaccagaaataagatcagaagagt |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931848 |
gatgaacaacatagaaagcaccaaattatacatgttaaaggaggtcttagtattataaggccacctttggaattggaaccagaaataagatcagaagagg |
38931749 |
T |
|
| Q |
206 |
caaaaacacatagtgagcatggagaaaagagagtagaggaagaagaagaagttgaagacgaacc |
269 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931748 |
caaaaacacatagagagcatggagaaaagagagtagaggaagaagaagaagttgaagacgaacc |
38931685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University