View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16778_high_12 (Length: 260)

Name: NF16778_high_12
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16778_high_12
NF16778_high_12
[»] chr4 (6 HSPs)
chr4 (3-112)||(24481402-24481511)
chr4 (179-260)||(24481254-24481335)
chr4 (11-98)||(24481922-24482009)
chr4 (38-98)||(24481820-24481880)
chr4 (2-37)||(24476989-24477024)
chr4 (27-98)||(24482054-24482125)
[»] chr2 (1 HSPs)
chr2 (27-63)||(41899998-41900034)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 24481511 - 24481402
Alignment:
Q  3 ccccaccatatgtatacaagtcgccacctccaccaccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccacaata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24481511 ccccaccatatgtatacaagtcgccacctccaccaccatatgtctacaagtcaccgccacctcctccatatgtttacgaatcacctcctcctccacaata 24481412  T
Q  103 tgtctacaaa 112  Q
    ||||||||||    
T  24481411 tgtctacaaa 24481402  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 24481335 - 24481254
Alignment:
Q  179 tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481335 tactactacaaacctataccccctccatatgtttatgagtctccaccatatatctataaatccccaccacccgctccctatg 24481254  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 24482009 - 24481922
Alignment:
Q  11 tatgtatacaagtcgccacctccaccaccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac 98  Q
    |||||||||||||| || || || || |||||||| |||||||| || |||||||||||||| || ||| | ||||| ||||||||||    
T  24482009 tatgtatacaagtcaccgccacctcctccatatgtgtacaagtcacccccacctcctccatacgtgtacaagtcaccacctcctccac 24481922  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 24481880 - 24481820
Alignment:
Q  38 ccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac 98  Q
    |||||||| |||||||| || ||||||||||||||||| ||| | ||||| ||||||||||    
T  24481880 ccatatgtgtacaagtcacccccacctcctccatatgtgtacaagtcaccacctcctccac 24481820  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 24477024 - 24476989
Alignment:
Q  2 cccccaccatatgtatacaagtcgccacctccacca 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24477024 cccccaccatatgtatacaagtcaccacctccacca 24476989  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 24482125 - 24482054
Alignment:
Q  27 cacctccaccaccatatgtctacaagtcgccgccacctcctccatatgtttacgaatcacctcctcctccac 98  Q
    |||| ||||| |||||||| |||||||| || |||||||||||||| || ||| | ||||| ||||||||||    
T  24482125 caccgccacctccatatgtatacaagtcacccccacctcctccatacgtgtacaagtcaccacctcctccac 24482054  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 41900034 - 41899998
Alignment:
Q  27 cacctccaccaccatatgtctacaagtcgccgccacc 63  Q
    |||||||||||||||||||||||||||| || |||||    
T  41900034 cacctccaccaccatatgtctacaagtccccaccacc 41899998  T

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