View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_high_6 (Length: 401)
Name: NF16778_high_6
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 27 - 389
Target Start/End: Original strand, 40060992 - 40061368
Alignment:
| Q |
27 |
ggtaatacatcgaagaagataaattgataatatcacatgcatagtttatttcttgtatatagaagagaaattacactggacgattgg------------- |
113 |
Q |
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| T |
40060992 |
ggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttttttaatata |
40061091 |
T |
|
| Q |
114 |
-attttttgatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaag |
212 |
Q |
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| T |
40061092 |
tattttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaag |
40061191 |
T |
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| Q |
213 |
cgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtc |
312 |
Q |
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| T |
40061192 |
cgttaatagctacagaacctaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtc |
40061291 |
T |
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| Q |
313 |
tttggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
389 |
Q |
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| T |
40061292 |
ttaggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
40061368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 40086865 - 40087228
Alignment:
| Q |
1 |
gttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatgcatagtttatttcttgtatatagaagagaaattac |
100 |
Q |
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| T |
40086865 |
gttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagagaaattac |
40086964 |
T |
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| Q |
101 |
actggacgattggattttttgatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagc |
200 |
Q |
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| T |
40086965 |
actggacgattggattttttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagc |
40087064 |
T |
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| Q |
201 |
tttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgttt--- |
297 |
Q |
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| T |
40087065 |
tttgtgaagaagcattaatagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttcgtttgaa |
40087164 |
T |
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| Q |
298 |
--atcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaat |
359 |
Q |
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| T |
40087165 |
acatcttattccgcgtcttaggatataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 40079134 - 40079393
Alignment:
| Q |
36 |
tcgaagaagataaattgataatatcacatgcatagtttatttcttgtatatagaagagaaattacactggacgattggattt-----tttgatatcttcg |
130 |
Q |
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| T |
40079134 |
tcgaagaagataaattaataatattacacgcatagttattttcttttatttagaagagaaattacactggacaattttctgtgtgtgtttaatatctcta |
40079233 |
T |
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| Q |
131 |
ctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaac |
230 |
Q |
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| T |
40079234 |
ctatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagatgtacacaaggccataaagctttgtgaagaagcactaatagctactgatc |
40079333 |
T |
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| Q |
231 |
ccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttg |
290 |
Q |
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| T |
40079334 |
ccaagatttcatctcttggtcaaaacctagaggtataggtggtatgtattgaaatttttg |
40079393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
139 |
tgcaggagttattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
222 |
Q |
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| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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