View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_high_7 (Length: 348)
Name: NF16778_high_7
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 39180474 - 39180143
Alignment:
| Q |
1 |
aagctatagtagcagcgccggaaactgaactgtagaaatatatagttcactttaatttttattttatcnnnnnnnnnntattagtgacttattttatttt |
100 |
Q |
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| T |
39180474 |
aagctatagtagcagcgccggaaactgaactgtagaaatatatagttcactttaatttttattttatcaaaaaaaaaatattagtgacttattttatttt |
39180375 |
T |
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| Q |
101 |
attctcacttttctatataattaatcagatgttgaaaatgtcttacattcctttatatctactttttctattaaattttgtttccacgttaaaaattgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39180374 |
attctcacttttctatataattaatcagatgttgaaaaagtcttacattcctttatatctactttttctattaaattttgtttccacgttcaaaattgtg |
39180275 |
T |
|
| Q |
201 |
aaa-caattacaagcatattctgtaaatgttgtgcctgccggctgcttatgatataatggtgacatgctgttattctaattaattactggtaataagtaa |
299 |
Q |
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| T |
39180274 |
aaaacaattacaagcatattctgtaaatgttgtgcctgccggctgcttatgatataatggtgacatgctgttattctaattaattactggtaataagtaa |
39180175 |
T |
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| Q |
300 |
tgaatagtaacggtaaactgtcatatatcttt |
331 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39180174 |
tgaatagtaacggtaaactgtcatatatcttt |
39180143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39221873 - 39221658
Alignment:
| Q |
1 |
aagctatagtagcagcg-ccggaaactgaactgtagaaatatatagttcactttaatttttattttatcnnnnnnnnnntattagtgacttattttattt |
99 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | || | || ||||||||||||| |||| |
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| T |
39221873 |
aagctatagtagcagccaccggaaactgaactgtagaa---tatagttcactttaatttttttattttattaaaacaattactagtgacttattt-attt |
39221778 |
T |
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| Q |
100 |
tattctcacttttctatataattaatcagatgttgaaaatgtcttacattcctttat--atctactttttctattaaattttgtttccacgttaaaaatt |
197 |
Q |
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||||||||||||||| ||| | |||||| |||| || |||| ||||||| | ||||| ||||||||||||| ||| |||||| |||||| || |
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| T |
39221777 |
tattctcacttttctgtat-------ctgatgttaaaaaagttttactttcctttttttatctattttttctattaaacttt--ttccacattaaaa-tt |
39221688 |
T |
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| Q |
198 |
gtgaaacaattacaagcatattctgtaaat |
227 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
39221687 |
gtgaaacagttacaagcatattctgtaaat |
39221658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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