View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16778_low_1 (Length: 729)

Name: NF16778_low_1
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16778_low_1
NF16778_low_1
[»] chr3 (3 HSPs)
chr3 (403-691)||(39865850-39866139)
chr3 (208-334)||(8652878-8653009)
chr3 (304-341)||(45501244-45501281)
[»] chr7 (5 HSPs)
chr7 (163-396)||(41533902-41534135)
chr7 (162-396)||(44909167-44909401)
chr7 (8-105)||(41534192-41534289)
chr7 (8-105)||(44909010-44909107)
chr7 (304-338)||(24322301-24322335)
[»] chr4 (5 HSPs)
chr4 (162-338)||(49398476-49398652)
chr4 (8-105)||(49398720-49398817)
chr4 (261-338)||(38014829-38014906)
chr4 (237-318)||(8503606-8503689)
chr4 (236-338)||(5825398-5825501)
[»] chr8 (3 HSPs)
chr8 (205-338)||(41348784-41348917)
chr8 (205-282)||(35758522-35758599)
chr8 (208-294)||(40450831-40450919)
[»] chr2 (2 HSPs)
chr2 (214-338)||(36391021-36391147)
chr2 (205-248)||(29920878-29920921)
[»] chr6 (3 HSPs)
chr6 (261-338)||(1035310-1035387)
chr6 (261-338)||(9427409-9427486)
chr6 (237-338)||(21982572-21982676)
[»] chr1 (1 HSPs)
chr1 (247-338)||(27420185-27420276)
[»] chr5 (2 HSPs)
chr5 (304-338)||(33283229-33283263)
chr5 (304-338)||(33283973-33284007)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 403 - 691
Target Start/End: Complemental strand, 39866139 - 39865850
Alignment:
Q  403 atccttttgtgtataaatttgttcaaccttgacttttcatcttctaa-acatactaacaatatagctaagaagtatagtttaaaaacatatttctaataa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39866139 atccttttgtgtataaatttgttcaaccttgacttttcatcttctaagacatactaacaatatagctaagaagtatagtttaaaaacatatttctaataa 39866040  T
Q  502 cttaaactgagatctatatttatggacatcattgttttaaatacactatataattagaaacatataaagtattagtatactgtctttgtgtaattgtgtt 601  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39866039 cttaaactgaggtttatatttatggacatcattgtttcaaatacattatataattagaaacatagaaagtattagtatactgtctttgtgtaattgtgtt 39865940  T
Q  602 cctactccattctggcagtcctaactcacaggcttgtttaacaaagcagttcactgcaatcacagcttgcactcaatgtctctctcttct 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39865939 cctactccattctggcagtcctaactcacaggcttgtttaacaaagcagttcactgcaatcacagcttgcactcaatgtctctctcttct 39865850  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 8653009 - 8652878
Alignment:
Q  208 agcttggacaaaaacagtgaccttgtgctgg---tggtgggtgagtgaccatggaggagagaa--tgatggtagaagaaagtgtggaaaaatctactaat 302  Q
    |||||||||| |||||||| |||| ||||||   |||||||||| |||||||||||||||||   ||||||||||||| | |||||||||||||| |  |    
T  8653009 agcttggacagaaacagtggccttatgctggaggtggtgggtgactgaccatggaggagagagagtgatggtagaagataatgtggaaaaatctagtgtt 8652910  T
Q  303 aagagagtatgattaaaatgtgttcctcattt 334  Q
     |||||||| ||||||||||||||||||||||    
T  8652909 gagagagtaggattaaaatgtgttcctcattt 8652878  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 45501244 - 45501281
Alignment:
Q  304 agagagtatgattaaaatgtgttcctcatttgatccaa 341  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  45501244 agagagtaggattaaaatgtgttcttcatttgatccaa 45501281  T

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Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 163 - 396
Target Start/End: Complemental strand, 41534135 - 41533902
Alignment:
Q  163 gaggtgaatcagtaaacagataatattaaaatatgaaggctagaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggagga 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41534135 gaggtgaatcagtaaacagataatattaaaatatgaaggctagaaagcttggacaaaaacagtgaccttgtgctggtggtggatgagtgaccatggagga 41534036  T
Q  263 gagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatccaagggccnnnnnnncctttccca 362  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||    
T  41534035 gagaatgatggtagaagaaagtgtggaaaaatctagtaataagagagtatgattaaaatgtgttcctcatttgatccaacggccaaaaaaacctttccca 41533936  T
Q  363 tgatggnnnnnnncttacctttcccaaattaaac 396  Q
    || |||       |||||||||||||||||||||    
T  41533935 tggtggaaaaaaacttacctttcccaaattaaac 41533902  T

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Target: chr7; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 162 - 396
Target Start/End: Original strand, 44909167 - 44909401
Alignment:
Q  162 tgaggtgaatcagtaaacagataatattaaaatatgaaggctagaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggagg 261  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44909167 tgaggtgaatcagtaaacagataatattaaaatatgaaggttagaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggagg 44909266  T
Q  262 agagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatccaagggccnnnnnnncctttccc 361  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||       ||||||||    
T  44909267 agagaatgatggtagaagaaagtgtggaaaaatctagtaataagagagtatgattaaaatgtattcctcatttgatccaacggccaaaaaaacctttccc 44909366  T
Q  362 atgatggnnnnnnncttacctttcccaaattaaac 396  Q
    ||| |||       |||||||||||||||||||||    
T  44909367 atggtgggaaaaaacttacctttcccaaattaaac 44909401  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 41534289 - 41534192
Alignment:
Q  8 gagtagcatagggggaagggcgggagagcttagagagagagacggcgtcgggctcggtccagtgcggtgggtcatcgccggcaaggagagaagtccat 105  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41534289 gagttgcaaagggggaagggcgggagagtttagagagagagacgacgtcgggctcggtccagtgcggtgggtcatcgccggcagggagagaagtccat 41534192  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 44909010 - 44909107
Alignment:
Q  8 gagtagcatagggggaagggcgggagagcttagagagagagacggcgtcgggctcggtccagtgcggtgggtcatcgccggcaaggagagaagtccat 105  Q
    |||| ||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||    
T  44909010 gagttgcaaagggggaagggcgagagagtttagagagagagacgacgtcgggctcggttcagtgtggtgggtcatcgccggtagggagagaagtccat 44909107  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 24322301 - 24322335
Alignment:
Q  304 agagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||| ||||||||||||||||||||||    
T  24322301 agagagtatgataaaaatgtgttcctcatttgatc 24322335  T

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Target: chr4 (Bit Score: 157; Significance: 4e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 162 - 338
Target Start/End: Complemental strand, 49398652 - 49398476
Alignment:
Q  162 tgaggtgaatcagtaaacagataatattaaaatatgaaggctagaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggagg 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49398652 tgaggtgaatcagtaaatagataatattaaaatatgaaggctagaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggagg 49398553  T
Q  262 agagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||    
T  49398552 agagaatgatggtagaagaaagtgtgaaaaaatttagtaatgagagagtatgattaaaatgtgttcctcatttgatc 49398476  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 49398817 - 49398720
Alignment:
Q  8 gagtagcatagggggaagggcgggagagcttagagagagagacggcgtcgggctcggtccagtgcggtgggtcatcgccggcaaggagagaagtccat 105  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  49398817 gagttgcaaagggggaagggcgggagagtttagagagagagacggcgtcgggctcggtccagtgcggtgggtcatcgtcggcggggagagaagtccat 49398720  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 38014829 - 38014906
Alignment:
Q  261 gagagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatc 338  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||    
T  38014829 gagagaatgatggtagaagaaagtgtggaaaaatctagtagtgagagagtatgattaaaatgtgttcctcatttgatc 38014906  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 8503606 - 8503689
Alignment:
Q  237 ggtggtgggtgagtgaccatggag--gagagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaa 318  Q
    ||||||||||||||||||||||||  |||||| | ||||||||||| |||||||||||||||| |  | |||||||| ||||||    
T  8503606 ggtggtgggtgagtgaccatggaggagagagagtcatggtagaagatagtgtggaaaaatctagtgttgagagagtaggattaa 8503689  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 5825501 - 5825398
Alignment:
Q  236 tggtggtgggtgagtgaccatggaggagaga--atgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatt 333  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| |||||  ||||||||| |  | |||||||| ||| | |||||||||||||||    
T  5825501 tggtggtgggtgagggagcatgcaggagagagaatgatggtagaagatagtgta-aaaaatctagtgttgagagagtaggataataatgtgttcctcatt 5825403  T
Q  334 tgatc 338  Q
    |||||    
T  5825402 tgatc 5825398  T

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Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 205 - 338
Target Start/End: Original strand, 41348784 - 41348917
Alignment:
Q  205 gaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggaggagagaatgatggtagaagaaagtgtggaaaaatctactaataa 304  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  41348784 gaaagcttggacaaattcagtgaccttgtgttggtggtgggtgagtgaccatggaggagagaatgatggtagaagaaagtgtggaaaaatctagcaatga 41348883  T
Q  305 gagagtatgattaaaatgtgttcctcatttgatc 338  Q
    ||||||||||||||||||| ||||||||||||||    
T  41348884 gagagtatgattaaaatgtattcctcatttgatc 41348917  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 35758599 - 35758522
Alignment:
Q  205 gaaagcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggaggagagaatgatggtagaagaaa 282  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35758599 gaaagcttggacaaaaatagtgacgttgtgctggtggtgggtgagtgaccatggaggagagagtgatggtagaagaaa 35758522  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 40450831 - 40450919
Alignment:
Q  208 agcttggacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggag--gagagaatgatggtagaagaaagtgtggaaaaat 294  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||    
T  40450831 agcttggacggaaacagtggccttatgctggtggtgggtgagtgaccatggaggagagagagtgatggtagaagatagtgtggaaaaat 40450919  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 36391147 - 36391021
Alignment:
Q  214 gacaaaaacagtgaccttgtgctggtggtgggtgagtgaccatggaggagagaa--tgatggtagaagaaagtgtggaaaaatctactaataagagagta 311  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||| |  | ||||| ||    
T  36391147 gacagaaacagtggccttatgctggtggtgggtgagtgaccatggaggagagagagtgatggtagaagatagtgtggaaaaatctagtgttgagagaata 36391048  T
Q  312 tgattaaaatgtgttcctcatttgatc 338  Q
     ||||||||||||||||||||||||||    
T  36391047 ggattaaaatgtgttcctcatttgatc 36391021  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 29920921 - 29920878
Alignment:
Q  205 gaaagcttggacaaaaacagtgaccttgtgctggtggtgggtga 248  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||    
T  29920921 gaaagtttggacaaatacagtgaccttgtgctggtggtgggtga 29920878  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 1035310 - 1035387
Alignment:
Q  261 gagagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||    
T  1035310 gagagaatgatggtagaagaaagtgtggaaaaatttagtaatgagagagtatgattaaaatgtgtttctcatttgatc 1035387  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 9427486 - 9427409
Alignment:
Q  261 gagagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  9427486 gagagaatgatgatagaagaaagtgtggaaaaatctagtaatgaaagagtatgattaaaatgtgttcctcatttgatc 9427409  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 21982676 - 21982572
Alignment:
Q  237 ggtggtgggtgagtgaccatggagga--gagaatgatggtagaagaaagtgtggaaaaatctact-aataagagagtatgattaaaatgtgttcctcatt 333  Q
    ||||||||||||||||||||||||||  |||| | |||||||||||||||||| ||||||||| |   | |||||||| ||||||||||||||||| |||    
T  21982676 ggtggtgggtgagtgaccatggaggagagagagtaatggtagaagaaagtgtgaaaaaatctagtgttttagagagtaggattaaaatgtgttccttatt 21982577  T
Q  334 tgatc 338  Q
    |||||    
T  21982576 tgatc 21982572  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 27420185 - 27420276
Alignment:
Q  247 gagtgaccatggaggagagaatgatggtagaagaaagtgtggaaaaatctactaataagagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||||||||||| | ||||||||||| |||||| ||||||||| |  | |||||||||||||||||||||||||||||||||||    
T  27420185 gagtgaccatggaggagagagtaatggtagaagatagtgtgaaaaaatctagtgtttagagagtatgattaaaatgtgttcctcatttgatc 27420276  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 33283263 - 33283229
Alignment:
Q  304 agagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||| ||||||||||||||||||||||    
T  33283263 agagagtatgataaaaatgtgttcctcatttgatc 33283229  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 33283973 - 33284007
Alignment:
Q  304 agagagtatgattaaaatgtgttcctcatttgatc 338  Q
    |||||||||||| ||||||||||||||||||||||    
T  33283973 agagagtatgataaaaatgtgttcctcatttgatc 33284007  T

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