View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_10 (Length: 292)
Name: NF16778_low_10
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 7663721 - 7663450
Alignment:
| Q |
19 |
gagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7663721 |
gagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagagg |
7663622 |
T |
|
| Q |
119 |
tgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7663621 |
tgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatcactgcccacaact |
7663522 |
T |
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| Q |
219 |
ttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtg |
290 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663521 |
ttgtctaattcttcttggactttagctagaattcttgggtttcgaattaattctgcaatggcccattctgtg |
7663450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 7620171 - 7620442
Alignment:
| Q |
19 |
gagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620171 |
gagcgatggcccatacattgaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
7620270 |
T |
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| Q |
119 |
tgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaact |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
7620271 |
tgttgatggatgcaagcggaatgtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatctcgacccacaaca |
7620370 |
T |
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| Q |
219 |
ttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtg |
290 |
Q |
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||||| ||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620371 |
ttgtccaattcttgttgaacttgagctaagattcttgggtttcgaattaattctgcaatggcccattctgtg |
7620442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 7669418 - 7669154
Alignment:
| Q |
19 |
gagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7669418 |
gagcaatggcccatacattaaccaaaagagttgaactctttggaacgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagagg |
7669319 |
T |
|
| Q |
119 |
tgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaact |
218 |
Q |
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||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
7669318 |
tgttgatgggtgcaagcgaaatgtttcttttatcactgtttgtaggtaaggtaggttaggtatgtcatct--tttcacgttcctatctcggcccacaaca |
7669221 |
T |
|
| Q |
219 |
ttgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccatt |
285 |
Q |
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||||| ||||||| ||| |||| |||||| |||||||||||| || | || |||||||||||||| |
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| T |
7669220 |
ttgtccaattcttgttgaacttgagctaagattcttgggtttttgatcatttttgcaatggcccatt |
7669154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 7682960 - 7682739
Alignment:
| Q |
19 |
gagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
118 |
Q |
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|||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7682960 |
gagctatggcccatacatttaccaaaagagttgaatcctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagagg |
7682861 |
T |
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| Q |
119 |
tgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaact |
218 |
Q |
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||| |||||||||||||| || |||||||||| ||||||||| ||||||||||| | ||||| || ||||||||||||||||| || | || ||||| |
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| T |
7682860 |
tgtagatggatgcaagcgaaatgtttcttttaccactgcttgaaggtaaggtagttgaggtaaatcctcttctttcacgttcctgtctcgaccaacaacg |
7682761 |
T |
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| Q |
219 |
ttgtctaattcttcttggactt |
240 |
Q |
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| |||||||||| |||||||| |
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| T |
7682760 |
gtctctaattcttgttggactt |
7682739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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