View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_11 (Length: 277)
Name: NF16778_low_11
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 29238875 - 29239137
Alignment:
| Q |
1 |
tcatgtgaatttgatacctacggcgtcgtggttcagcgtttggtatggggatttcgcgagcgggagggaagaagactagatgtgcaccggtgtagttgta |
100 |
Q |
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| T |
29238875 |
tcatgtgaatttgatacctacggcgtcgtggttcagcgtttggtatggggatttcgcgagcgggagggaagaagactagatgtgcaccggtgtagttgta |
29238974 |
T |
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| Q |
101 |
ttggttgaaccgcgagtctgccatgtttggaaacaccgaggcgattcaagaagaaccctaattgtaaaaaagttaaacactattagcttaaatagtcgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
29238975 |
ttggttgaaccgcgagtctgccatgtttggaaacaccgaggcggttcaagaagaaccctaattgtaaaaaagttacacactatttgcttaaatagtcgat |
29239074 |
T |
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| Q |
201 |
caagggctaacatatctaagttaggtcctctgattttgctaaaattaaatggacaatgtcatt |
263 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29239075 |
caagggctaaaatatctaagttaggtcctctgattttgctaaaattaaatggacaatgtcatt |
29239137 |
T |
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