View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16778_low_15 (Length: 259)
Name: NF16778_low_15
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 42546970 - 42546712
Alignment:
| Q |
1 |
aaaaaatattgtagttggtgtgatgtattagtttcatctcaaagtctcatttgttgactgtaacttatttttgtgcttaataaaagcttaagtggcaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42546970 |
aaaaaatattgtagttggtgtgatgtattagtttcatctcaaagtcacatttgttgactgtaacttatttttgtgcttaataaaagcttaagtggcaatg |
42546871 |
T |
|
| Q |
101 |
aaatggcacaaaccaattggttagttaaggttccaaaatttgatatcgctgaaaatgacatctaattacacgtatatatgatcttcatactatttgcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42546870 |
aaatggcacaaaccaattggttagttaaggttccaaaatttgatattgctgaaagtgacatctaattacacgtatatatgatgttcatactatttgcagg |
42546771 |
T |
|
| Q |
201 |
cgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42546770 |
cgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattat |
42546712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University