View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_17 (Length: 246)
Name: NF16778_low_17
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49305409 - 49305638
Alignment:
| Q |
1 |
cacagataaaaacaaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgt |
100 |
Q |
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| T |
49305409 |
cacagataaaaacaaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgt |
49305508 |
T |
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| Q |
101 |
tgtgttcaaaatagaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaa |
200 |
Q |
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| T |
49305509 |
tgtgttcaaaatagaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaa |
49305608 |
T |
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| Q |
201 |
agacaagagggaaaaaagaacaagtggagt |
230 |
Q |
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| T |
49305609 |
agacaagagggaaaaaagaacaagtggagt |
49305638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 49298456 - 49298553
Alignment:
| Q |
38 |
tatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgt----gttcaaaatagaataaacgtactgtaacat |
133 |
Q |
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| T |
49298456 |
tatatttatgaagacgatagtatgtgta--gcgtatgtgattcgggtgcaaaccgtttgttgttgttatgcttaaaaatagaataaacgcactgtaacat |
49298553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 49290655 - 49290718
Alignment:
| Q |
70 |
gtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaaatagaataaacgtactgtaacat |
133 |
Q |
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| T |
49290655 |
gtatgtgattcgggtgcaaaccgtgtgttgttatgctggaaatagaataaacccactgtaacat |
49290718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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