View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_2 (Length: 590)
Name: NF16778_low_2
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 35409635 - 35409060
Alignment:
| Q |
1 |
caaagttcatggctgtgattaacataggttctgcacattcacctgatgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctga |
100 |
Q |
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| T |
35409635 |
caaagttcatggctgtgattaacataggttctgcacattcacctgatgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctga |
35409536 |
T |
|
| Q |
101 |
gatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggc |
200 |
Q |
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| T |
35409535 |
gatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggc |
35409436 |
T |
|
| Q |
201 |
catggggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgc |
300 |
Q |
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| T |
35409435 |
catggagtttcaccatatgaattgttaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgc |
35409336 |
T |
|
| Q |
301 |
gaagaaagaccagccacggaatatcacacctttgttttccaccannnnnnnctcacggaatctttactacttactagtagatcaagacatttatgccgtg |
400 |
Q |
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| T |
35409335 |
gaagaaagaccagccacggaatatcacacctttgttttccaccatttttttctcacggaatctttactacttactagtagatcaagacatttatgccgtg |
35409236 |
T |
|
| Q |
401 |
cagaaatcatttgaagatgaattttgcatagttaaattcagtcagaaatcagcacattgattaagaataaagtatgaaattgctcaagaccttgaaagca |
500 |
Q |
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| T |
35409235 |
cagaaatcatttgaagatgaattttgcatagttaaattcagtcagaaatcagcacattgattaagaataaagtatgaaattgctcaagaccttgaaagca |
35409136 |
T |
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| Q |
501 |
gtttaacaaaaaacagatgtatgttgaaatactaaaccatctattctgttcaaattcgtgaacatatattaaagat |
576 |
Q |
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| T |
35409135 |
gtttaacaaaaaacagatgtatgttgaaatactaaaccatctattctgttcaaattcgtgaacatataataaagat |
35409060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 35408269 - 35407975
Alignment:
| Q |
5 |
gttcatggctgtgattaacataggttctgcacattcacctgatgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctgagatc |
104 |
Q |
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||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
35408269 |
gttcatggctgtgatcaacataggttcctcacattcgcctgatgaggaatatataggagatagaaatgacaagtcttcatggtttggagaatctgagatc |
35408170 |
T |
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| Q |
105 |
attgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatg |
204 |
Q |
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| T |
35408169 |
attgatgcattcaaccaattttcaatggacatgaaaaatattgagaaggagattgacagaagaaatatcgatccaaaacttaggaatcgatgtggccatg |
35408070 |
T |
|
| Q |
205 |
gggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatg |
299 |
Q |
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| T |
35408069 |
gagtttcaccatatgaactgcttataccaagctcgggatgcggtgccactggacgatgggtgccaaatagtgcaacagcctagcagtttaatatg |
35407975 |
T |
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