View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16778_low_4 (Length: 428)

Name: NF16778_low_4
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16778_low_4
NF16778_low_4
[»] chr2 (38 HSPs)
chr2 (3-422)||(10371703-10372122)
chr2 (28-410)||(10347655-10348037)
chr2 (156-421)||(10353107-10353372)
chr2 (5-311)||(9291790-9292090)
chr2 (19-325)||(8573480-8573786)
chr2 (5-409)||(9061020-9061433)
chr2 (29-410)||(9065476-9065864)
chr2 (141-410)||(12012430-12012705)
chr2 (120-310)||(9284180-9284370)
chr2 (28-344)||(9274391-9274707)
chr2 (28-311)||(16268959-16269242)
chr2 (194-410)||(12006002-12006224)
chr2 (130-325)||(9320954-9321146)
chr2 (156-325)||(9328597-9328766)
chr2 (186-397)||(10335872-10336074)
chr2 (167-410)||(7115523-7115775)
chr2 (132-325)||(11987465-11987655)
chr2 (113-402)||(9315974-9316266)
chr2 (12-80)||(10335731-10335799)
chr2 (5-80)||(9284389-9284464)
chr2 (5-80)||(9315887-9315962)
chr2 (192-325)||(9364662-9364795)
chr2 (28-80)||(9320873-9320925)
chr2 (5-78)||(10341217-10341293)
chr2 (18-81)||(7115843-7115906)
chr2 (5-80)||(11987686-11987761)
chr2 (5-102)||(12012729-12012823)
chr2 (194-249)||(12018939-12018994)
chr2 (12-77)||(12019090-12019155)
chr2 (28-80)||(9328490-9328542)
chr2 (193-273)||(17566110-17566190)
chr2 (195-265)||(8579522-8579592)
chr2 (12-73)||(10352984-10353045)
chr2 (258-311)||(8576398-8576451)
chr2 (193-273)||(7611974-7612054)
chr2 (43-80)||(12006317-12006354)
chr2 (350-402)||(9292117-9292169)
chr2 (350-402)||(16269272-16269324)
[»] chr4 (2 HSPs)
chr4 (156-422)||(26574856-26575125)
chr4 (211-270)||(561275-561334)
[»] chr3 (2 HSPs)
chr3 (29-311)||(37462360-37462645)
chr3 (195-255)||(39427680-39427740)
[»] scaffold0667 (1 HSPs)
scaffold0667 (37-408)||(4350-4727)
[»] chr7 (5 HSPs)
chr7 (115-293)||(45243656-45243834)
chr7 (141-293)||(45230415-45230570)
chr7 (186-268)||(45237978-45238060)
chr7 (28-83)||(45230299-45230354)
chr7 (28-81)||(45243561-45243614)
[»] chr1 (8 HSPs)
chr1 (193-397)||(29453210-29453411)
chr1 (193-407)||(29443217-29443428)
chr1 (193-397)||(29423300-29423501)
chr1 (103-410)||(29467673-29467977)
chr1 (5-80)||(29453503-29453578)
chr1 (5-80)||(29467979-29468054)
chr1 (18-80)||(29423146-29423208)
chr1 (28-80)||(29443520-29443572)
[»] chr8 (2 HSPs)
chr8 (186-323)||(41966682-41966819)
chr8 (12-76)||(41966911-41966975)
[»] chr5 (1 HSPs)
chr5 (194-255)||(36224454-36224515)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 3 - 422
Target Start/End: Original strand, 10371703 - 10372122
Alignment:
Q  3 accatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10371703 accatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtacctccaacaaaa 10371802  T
Q  103 catgatctccttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10371803 catgatctccttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaacccaaacttgatttaaccaaagtaaa 10371902  T
Q  203 aagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaa 302  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10371903 aagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacaccctcctaaa 10372002  T
Q  303 acagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcga 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10372003 acagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaacgcga 10372102  T
Q  403 gaattaaatcagattgaaat 422  Q
    ||||||||||||||||||||    
T  10372103 gaattaaatcagattgaaat 10372122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 10347655 - 10348037
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaacctt 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||| ||||||||    
T  10347655 ttccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaacatgagctctttccaacagaacctt 10347754  T
Q  128 ccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaa 227  Q
     |||||||||| ||||||||| | ||| |||||  ||| |||||||||||| ||||  || | | ||| ||||||||||||| |||||||||||||| |     
T  10347755 acttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaactatctctacat 10347854  T
Q  228 ccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaactat 327  Q
    |||||||||||||| ||||||| |||||  ||||||  ||||||||| ||||| |||||||||||||| || |||||||||||| ||| ||||||||| |    
T  10347855 ccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaaaacagcaacatgaacttcaaaactct 10347954  T
Q  328 tactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaattaaa 410  Q
     || ||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||  |||||||| |||| |||||||    
T  10347955 caccattaacttcttcacctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaa 10348037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 156 - 421
Target Start/End: Original strand, 10353107 - 10353372
Alignment:
Q  156 ctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaa 255  Q
    |||||||||| |||||||||||| |||   |||||||||| ||||||||||||| ||||||| |||||| | |||||||||||||||||||||| |||||    
T  10353107 ctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaa 10353206  T
Q  256 cgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttcatc 355  Q
      ||||||  ||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||||  ||| ||||||    
T  10353207 ttttagtatctttataatccacaatcatacaaagacaccctcctaaagcagcaacacgaattttaaaactcttactattaacttcttcctctatttcatc 10353306  T
Q  356 agggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaattaaatcagattgaaa 421  Q
    ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  10353307 aggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcgagaattaaatcaggttgaaa 10353372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 9291790 - 9292090
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaaca 104  Q
    |||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||     
T  9291790 catagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgatttacctccaacaaaacc 9291889  T
Q  105 tgatctccttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaa 204  Q
    |||  ||| ||||| |||||||| |||||||| | ||||||||| || || |||||||||| |||||  ||   |      |||||||||||||||||||    
T  9291890 tgagttccgtccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaagtgaaccgc------gatttaaccaaagtaaaaa 9291983  T
Q  205 gtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaac 304  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||||  |||||||||| ||||| ||||||||||||||||||| | ||||||||    
T  9291984 gtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacactctcctaaaac 9292083  T
Q  305 agcaaca 311  Q
    |||||||    
T  9292084 agcaaca 9292090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 8573786 - 8573480
Alignment:
Q  19 aattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaa 118  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||   ||||| | ||||||| | |  |||||||||    
T  8573786 aattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgacaaaacttcaattccttccaa 8573687  T
Q  119 aagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaacta 218  Q
     |||||||| |||||||||| ||||||||  || || ||| ||||||  ||| ||  |   ||||  |||||||| ||||||||||||||| ||||||||    
T  8573686 cagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaacta 8573587  T
Q  219 tctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaattt 318  Q
    ||||||||||||||||||||||||||||||| |||||  | ||| |||| ||||| ||||| ||||||||||||||| || |||||||||| ||||| ||    
T  8573586 tctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaaaacagcaagacgaaatt 8573487  T
Q  319 caaaact 325  Q
     ||||||    
T  8573486 taaaact 8573480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 9061433 - 9061020
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatg--ttgtaccttcaacaaaa 102  Q
    |||||| ||||| ||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |  || || |     |||      
T  9061433 catagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttcctaagagttttatc-----caagt 9061339  T
Q  103 catgatctccttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaa 202  Q
     | ||| | ||||||| |||||||| | |||||||| ||||||||| || || |||||| | ||||||||| |||  ||||  |||||||||||||||||    
T  9061338 taggatttgcttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaa 9061239  T
Q  203 aagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaa 302  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||| |||||  ||||||| || ||||| ||||| ||| ||||||||||| || |||    
T  9061238 aagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaaa 9061139  T
Q  303 acagcaacacgaatttcaaa---------actattactattaacttcttcac---ctagttcatcagggagaggaacctcattgaaagtctcaagtgata 390  Q
    |||||||||||||||| |||         ||||||||| ||||| |||||||   ||| |||| | || |||||||||||||||||| | |||||||  |    
T  9061138 acagcaacacgaattttaaaactcccattactattactgttaacctcttcaccttctaattcaacgggaagaggaacctcattgaaaatttcaagtgtga 9061039  T
Q  391 ggttaaaggcgagaattaa 409  Q
    ||||||| |||| ||||||    
T  9061038 ggttaaatgcgacaattaa 9061020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 29 - 410
Target Start/End: Complemental strand, 9065864 - 9065476
Alignment:
Q  29 tccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaaccttc 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||  ||| | ||||| ||||||||| | |  | ||||||| ||||||||     
T  9065864 tccttcaacataaataacttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacctcaattgcttccaacagaacctta 9065765  T
Q  129 cttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaac 228  Q
    ||||||||||  |||||||  |  || ||| ||| |  |||| || |||  ||||  ||||| |||||||||||||||||| |||||||||||||||| |    
T  9065764 cttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatc 9065665  T
Q  229 catattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaact--- 325  Q
    ||||||||||||||||||||  |||||  |||||||||| ||||| || | |||||||||||||||| || ||||||||||||   |||| ||||||       
T  9065664 catattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagacaccctcccaaaacagcaacagtcatttgaaaactctc 9065565  T
Q  326 attactattaacttcttcacc---tagttcatcagggagaggaacctc-attgaaagtctcaagtgataggttaaaggcgagaattaaa 410  Q
    |||||||||||| ||||||||   || |||| |||| || |||||||| ||||||| | |||||||  |||||||| || | |||||||    
T  9065564 attactattaacctcttcacctcttatttcagcaggaaggggaacctcaattgaaaatttcaagtgtgaggttaaatgcaacaattaaa 9065476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 141 - 410
Target Start/End: Complemental strand, 12012705 - 12012430
Alignment:
Q  141 gaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttca 240  Q
    ||||||| ||| ||||||||| ||  |||||||||| | ||||  ||||  |||||||||||||||||| ||||||||||| || |||||||||||||||    
T  12012705 gaataacccaaaggtctcaaaaatatcaaaggtaaaacgaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttca 12012606  T
Q  241 tcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaa---actattactattaac 337  Q
    ||||| | | |||||  |||||||||| || || |||| |||||||||||||||| || ||| ||||||||  |||||||||   |||||||| | ||||    
T  12012605 tcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaactactattacaaataac 12012506  T
Q  338 ttcttcacc---tagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaattaaa 410  Q
     ||||||||   || ||||||||| |  |||||||||||||||  |||||||| ||||||||| |||| |||||||    
T  12012505 ctcttcacctcatatttcatcaggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaa 12012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 310
Target Start/End: Complemental strand, 9284370 - 9284180
Alignment:
Q  120 agaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactat 219  Q
    |||||||| || ||||||| ||||||||  || || |||||||||| |||| |||||   || | |||||||||||||||||||| |||| |||||||||    
T  9284370 agaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactat 9284271  T
Q  220 ctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaac 310  Q
    ||||||||||||||||||||||||||||||  ||||  |||||||||| ||||| |||| |||||| |||||| || ||||||||||||||    
T  9284270 ctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcctaaaacagcaac 9284180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 344
Target Start/End: Original strand, 9274391 - 9274707
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaacctt 127  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||| |||| ||  | | ||| |    ||||||||  ||||||||| ||||||||    
T  9274391 ttcctttaacaaaactaacttgttcactcttcaaatcataccaaatcaggttcctattatttccctccgttgaaacatgaattccttccaacagaacctt 9274490  T
Q  128 ccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaa 227  Q
     |||||||||| ||||||||| || || || |||  |||||||  || |   ||||  | ||  | |||||||||||||||| ||||||||||| |||||    
T  9274491 acttccatcactagaataacataaaggcctaaaaatttccaaatctacaaggaaacaaggttccatcaaagtaaaaagtttacaccaactatctgtagaa 9274590  T
Q  228 ccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaactat 327  Q
    ||||||||||||||||||||||  ||||  | |||| ||  ||||| || ||||||||||||||||||  | |||||| |||||  |||||||||||| |    
T  9274591 ccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacacccttccaaaacaacaacattaatttcaaaactct 9274690  T
Q  328 tactattaacttcttca 344  Q
     |||||| |||||||||    
T  9274691 cactattgacttcttca 9274707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 16268959 - 16269242
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaacctt 127  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||  || || | ||||||||| | |  |||||| || ||||||||    
T  16268959 ttccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttataatgcacgtccaacaaaacctcaattccttcaaagagaacctt 16269058  T
Q  128 ccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaa 227  Q
     |||||||||| ||||||||  |  ||  |  || ||  |||| || ||   ||||  ||||||||||| |||||||||||  |||||||||||||| |     
T  16269059 acttccatcactagaataacctataggatttgaatatcgcaaatgtgaagtgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatat 16269158  T
Q  228 ccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaaca 311  Q
    ||||| |||||||||||||||| |||||  |||||||||| ||||| |||||| ||||||||||| || || ||||||||||||    
T  16269159 ccatactctttcatcacccaaacatcaattttagtagtttcataattcacagttatacaaagacatcctcccaaaacagcaaca 16269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 194 - 410
Target Start/End: Complemental strand, 12006224 - 12006002
Alignment:
Q  194 caaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacac 293  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||||| | |||||  |||||||||| ||||| |||| ||| ||||||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
Q  294 ccgcctaaaacagcaacacgaatttcaaaact---attactattaacttcttcacc---tagttcatcagggagaggaacctcattgaaagtctcaagtg 387  Q
    || || ||| ||||||||  ||||||||||||   ||||| | |||| ||||||||   || ||||||||| | ||||||||| ||||||  ||||||||    
T  12006124 cctcccaaatcagcaacattaatttcaaaactccgattacaaataacctcttcacctcttatttcatcaggaaaaggaacctcgttgaaaacctcaagtg 12006025  T
Q  388 ataggttaaaggcgagaattaaa 410  Q
     ||||||||| |||| |||||||    
T  12006024 ttaggttaaacgcgaaaattaaa 12006002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 325
Target Start/End: Original strand, 9320954 - 9321146
Alignment:
Q  130 ttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaacc 229  Q
    |||||||||  |||||||  || || |||||||||| ||||||||||||  |||  |||||||||| ||||||||||||| |||||||||||||||||||    
T  9320954 ttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaacc 9321053  T
Q  230 atattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaact 325  Q
    |||||||||||||||||||| |||||| || |||||||  ||||    |||||| ||||||||||| || |||||| |||||  ||||||||||||    
T  9321054 atattctttcatcacccaaacatcaacttttgtagtttcgtaat---aagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaact 9321146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 9328597 - 9328766
Alignment:
Q  156 ctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaa 255  Q
    |||||||||| |||||||||||  ||||  |||||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||||||| |||||    
T  9328597 ctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaa 9328696  T
Q  256 cgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaact 325  Q
      | |||||||| ||||| || |||||| ||||||||||| || |||||| |||||  ||||||||||||    
T  9328697 tttcagtagtttcataattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaact 9328766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 186 - 397
Target Start/End: Original strand, 10335872 - 10336074
Alignment:
Q  186 gatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 285  Q
    |||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| |||||  |||||||||| ||||| ||||| || ||    
T  10335872 gatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacaggcaaac 10335971  T
Q  286 aaagacacccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaag 385  Q
    |||||||||| || |||||||||| |  ||||| |||||| | | || |||          || ||||||||| |||||||||||||||||| |||||||    
T  10335972 aaagacaccctcccaaaacagcaatagaaattttaaaactctcattactaa---------ttatttcatcaggaagaggaacctcattgaaaatctcaag 10336062  T
Q  386 tgataggttaaa 397  Q
    |||||| |||||    
T  10336063 tgatagattaaa 10336074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 410
Target Start/End: Complemental strand, 7115775 - 7115523
Alignment:
Q  167 caaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagtt 266  Q
    ||||| |||||| ||||  || |||||||| |||||||||||| |||| || |||||||| ||||||| |||||||||||||| |||    |||||||||    
T  7115775 caaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagtt 7115676  T
Q  267 ttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaactatt------actattaacttcttca---cctagttcatcag 357  Q
     |||||| |||| |||||||||||||||| || |||||||||| |  || ||||| || |||      ||| ||||||| ||||   |||| ||||||||    
T  7115675 ctataattcacaatcatacaaagacaccctcccaaaacagcaatagaaagttcaataccattaccatcactgttaactttttcacctcctaattcatcag 7115576  T
Q  358 ggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaattaaa 410  Q
    | |||||||||||| |||||  |||||||| ||||||||| |||| |||||||    
T  7115575 gaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaattaaa 7115523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 325
Target Start/End: Complemental strand, 11987655 - 11987465
Alignment:
Q  132 ccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccat 231  Q
    |||||||  ||||||| ||| || |||||||||| |||||||||| | ||||  ||||  | ||| || ||||||||| |||||||||||||| | ||||    
T  11987655 ccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccat 11987556  T
Q  232 attctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaact 325  Q
    ||||||||||||||||||||||||  ||||||   | || || |||||||| |||||||||||| || ||||||||||||  ||||||||||||    
T  11987555 attctttcatcacccaaatatcaatcttagta---tgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatcaatttcaaaact 11987465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 402
Target Start/End: Original strand, 9315974 - 9316266
Alignment:
Q  113 ttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaac 212  Q
    |||||| |||||||| ||||| |||| ||||||||  || ||  ||||| | | ||||| ||||   |||| ||| ||||||||||||||||||||| ||    
T  9315974 ttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacac 9316073  T
Q  213 caactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacac 312  Q
    ||||||      || ||||| |||||||||||||||| ||||   |||||||||| ||||| || | |||||||||||||||| || ||||||||||||     
T  9316074 caacta------gatccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaaaacagcaacag 9316167  T
Q  313 gaatttcaaaact------attactattaacttcttcac---ctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcga 402  Q
     ||||| ||||||       | ||||||||| |||  ||   ||| |||| |||| ||||||||| |||||||| ||||||||| ||||||||| ||||    
T  9316168 caatttgaaaactctcacactcactattaacctctatactttctatttcagcaggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcga 9316266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 10335731 - 10335799
Alignment:
Q  12 tcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10335731 tcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttc 10335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 9284464 - 9284389
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| ||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  9284464 catagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttc 9284389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 9315887 - 9315962
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||||||    
T  9315887 catagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttc 9315962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 9364662 - 9364795
Alignment:
Q  192 accaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagac 291  Q
    ||||||||||| | |||| ||||||||||| |  | |||||||||||||||||||||| |||||  | |||||||| ||||| |||| |||||| |||||    
T  9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
Q  292 acccgcctaaaacagcaacacgaatttcaaaact 325  Q
    |||| || ||||| ||||||   |||||||||||    
T  9364762 accctcccaaaaccgcaacatcgatttcaaaact 9364795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 9320873 - 9320925
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9320873 ttccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 9320925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 10341217 - 10341293
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataa---ctaacttgttcactcttcaaatcataccaaaacagct 78  Q
    ||||||||||||||||| || | ||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  10341217 catagcatcatccaaatcaggaattccttcaacataataactaacttgttcactctccaaatcataccaaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 7115906 - 7115843
Alignment:
Q  18 aaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttcc 81  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcc 7115843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 11987761 - 11987686
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| ||||| || |||| | |||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  11987761 catagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttc 11987686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 12012823 - 12012729
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaa 102  Q
    |||||| ||||| ||||||| | ||||||||||||||||||||||   |||||||||||||||||||| |||||||  ||| | ||||| ||||||||    
T  12012823 catagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttcttatgatttacctccaacaaaa 12012729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 12018994 - 12018939
Alignment:
Q  194 caaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaa 249  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  12018994 caaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaa 12018939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 12019155 - 12019090
Alignment:
Q  12 tcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagc 77  Q
    ||||| ||||||| | |||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  12019155 tcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagc 12019090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 9328490 - 9328542
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    ||||||||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  9328490 ttccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttc 9328542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 17566190 - 17566110
Alignment:
Q  193 ccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataat 273  Q
    |||| ||||| | |||| ||||| |||||||| | ||||||||||| |||||||||| |||||| |||||||||| |||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataat 17566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 8579592 - 8579522
Alignment:
Q  195 aaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagt 265  Q
    |||||||| | |||| |||||||||||||| | ||||||| ||||||||||||||  ||||| ||||||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagt 8579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 10352984 - 10353045
Alignment:
Q  12 tcatccaaatt-agaatttccttcaacataactaacttgttcactcttcaaatcataccaaaa 73  Q
    ||||||||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||||||||    
T  10352984 tcatccaaattaagaattt-cttgaacataactaacttgtttactctccaaatcataccaaaa 10353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 8576451 - 8576398
Alignment:
Q  258 ttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaaca 311  Q
    |||||||||| ||||| |||| |||||||||||||||| || ||||||||||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaaca 8576398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 7611974 - 7612054
Alignment:
Q  193 ccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataat 273  Q
    |||||||||| | |||| ||||||||||| |  | |||||||||||||||||||||| |||||  ||| |||||| |||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataat 7612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 12006354 - 12006317
Alignment:
Q  43 taacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  12006354 taacttcttcactcttcaaatcataccaaaccagcttc 12006317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 9292117 - 9292169
Alignment:
Q  350 ttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcga 402  Q
    |||| |||| | ||||||| |||||||||||||||||| ||||||||| ||||    
T  9292117 ttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcga 9292169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 16269272 - 16269324
Alignment:
Q  350 ttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcga 402  Q
    |||| |||| ||||||||||| |||||| ||||||||| ||||||||| ||||    
T  16269272 ttcagcaggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcga 16269324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 156 - 422
Target Start/End: Original strand, 26574856 - 26575125
Alignment:
Q  156 ctcaaagattccaaaggtaaatcc---aaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatat 252  Q
    ||||||||||||| |||||||||    ||||  |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||    
T  26574856 ctcaaagattccacaggtaaatcatcgaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacat 26574955  T
Q  253 caacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttc 352  Q
    |||  ||||||  |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||| ||| |||| |||    
T  26574956 caattttagtatctttataatccacagtcatacaaagacaccctcctaaatcagcaacacgaattttaaaactcttactattaacttgttcccctatttc 26575055  T
Q  353 atcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaattaaatcagattgaaat 422  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26575056 atcaggaagaggaacctcgttgaaagtctcaagtgaaaggttaaaagcgagaattaaatcagattgaaat 26575125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 561275 - 561334
Alignment:
Q  211 accaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttat 270  Q
    |||||||||||||| | |||||||||||||| ||||||| |||||| |||||||||||||    
T  561275 accaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttat 561334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 311
Target Start/End: Original strand, 37462360 - 37462645
Alignment:
Q  29 tccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaaccttc 128  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||| |  || | ||||||||||||||| |||   |||||||| | ||||||     
T  37462360 tccttcaatataactaacttgttcactcttccaatcataccaaaacagctttctgtgatctaccttcaacaaaacctgaatgccttccaacaaaacctta 37462459  T
Q  129 cttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaac 228  Q
    |||||||||| ||||||||| || || |||||||||| ||||||| ||   ||||  |||||| ||| |||| |||||||| |||||||||||||||| |    
T  37462460 cttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaactatctctagatc 37462559  T
Q  229 catattctttcatcacccaaatatcaacgttagtag---ttttataatccacagtcatacaaagacacccgcctaaaacagcaaca 311  Q
    ||||||||||||||||||||| |||||  |||||||   ||||||||| |||||||||||||||||| || || ||||||||||||    
T  37462560 catattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaaacagcaaca 37462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 39427680 - 39427740
Alignment:
Q  195 aaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaa 255  Q
    |||||||| | |||| ||||||||| |||| | |||||||||||||||||||||| |||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 408
Target Start/End: Original strand, 4350 - 4727
Alignment:
Q  37 cataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtaccttcaacaaaacatgatctccttccaaaagaaccttccttccatc 136  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||| || |||| ||||||||| | |  |||||| |  |||||||| ||||||||    
T  4350 cataactaacttgttcagtcttcaaatcataccaaaacagcttcttatgatgcacctccaacaaaacctcaattccttcaatcagaaccttacttccatc 4449  T
Q  137 acgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattct 236  Q
    || ||||||||| || || ||| |||||| |||| || ||   | ||  ||||| | || ||||||||||||| ||||||||||| |  | ||||||| |    
T  4450 actagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaactatcttttaatccatattgt 4549  T
Q  237 ttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaaacagcaacacgaatttcaaaact---attactat 333  Q
    ||||||||||||| |||||  |||||||||| ||||| |||||||||||||||||| || || ||| ||||||||  |||||||| |||   |||   ||    
T  4550 ttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacactgtcatttgaat 4649  T
Q  334 taa---cttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcgagaatta 408  Q
    |||   |||||||||||| ||| ||||| |||||||||||||||||| | ||||||| ||||||||| |||| |||||    
T  4650 taacctcttcttcacctatttcgtcaggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 4727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 45243656 - 45243834
Alignment:
Q  115 ccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaacca 214  Q
    |||| ||||| || |||| |||||  |||||||| || || ||||||||||||||| | ||||  ||||  |||||||||||||||||||||||| ||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
Q  215 actatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacac 293  Q
    | ||||||||||||||||||||||||||||||||| |||||  | | |||||| ||||| |||| ||||||||||||||    
T  45243756 aatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacac 45243834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 45230415 - 45230570
Alignment:
Q  141 gaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttca 240  Q
    |||||||| || |||||||||||| ||||| | ||||  || |  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45230415 gaataacataaaggtctcaaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttca 45230514  T
Q  241 tcacccaaatatcaacg---ttagtagttttataatccacagtcatacaaagacac 293  Q
    ||||||||| |||| |    ||| |||||| ||||| |||| ||||||||||||||    
T  45230515 tcacccaaacatcatcaattttattagtttgataattcacaatcatacaaagacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 45237978 - 45238060
Alignment:
Q  186 gatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagtttt 268  Q
    |||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||  | |||||||||    
T  45237978 gattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaatttgagtagtttt 45238060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 45230299 - 45230354
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaa 83  Q
    |||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  45230299 ttccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttccaa 45230354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 45243561 - 45243614
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttcc 81  Q
    |||||| ||||||| ||| ||||||||| || | ||||||||||||||||||||    
T  45243561 ttccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttcc 45243614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 193 - 397
Target Start/End: Complemental strand, 29453411 - 29453210
Alignment:
Q  193 ccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagaca 292  Q
    ||||||||||||||| | |||| ||||||||| | |||||||||||||||||||||| |||||  |||  ||||| ||||| |||| |||||||||||||    
T  29453411 ccaaagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagaca 29453312  T
Q  293 cccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgatagg 392  Q
    |||  | ||||| ||||||| |||||||||||| | |||||| ||||||||||||| |   ||||| | |||||||||||||||| ||||  ||| ||||    
T  29453311 cccttccaaaaccgcaacaccaatttcaaaactctcactattcacttcttcacctatt---tcaggaaaaggaacctcattgaaaatctcgtgtgttagg 29453215  T
Q  393 ttaaa 397  Q
    |||||    
T  29453214 ttaaa 29453210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 407
Target Start/End: Complemental strand, 29443428 - 29443217
Alignment:
Q  193 ccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagaca 292  Q
    ||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||| |||||  |||| ||||| ||||| |||| |||||||||||||    
T  29443428 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagaca 29443329  T
Q  293 cccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgatagg 392  Q
    |||  | | ||| | || || ||||| |||||| | ||||||||| |||||||||| |   ||||| | |||||||||||||||| |||| |||| ||||    
T  29443328 cccttccagaaccgaaataccaatttgaaaactctcactattaacatcttcacctatt---tcaggaaaaggaacctcattgaaaatctcgagtgttagg 29443232  T
Q  393 ttaaaggcgagaatt 407  Q
    ||||| |||| ||||    
T  29443231 ttaaacgcgacaatt 29443217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 397
Target Start/End: Original strand, 29423300 - 29423501
Alignment:
Q  193 ccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagaca 292  Q
    ||||||||||||||||| |||| ||||||||| | |||||||||||||||| ||||| |||||  |||  ||||| ||||| ||||||||||||||| ||    
T  29423300 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggca 29423399  T
Q  293 cccgcctaaaacagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgatagg 392  Q
    |||  | | ||| ||||||| |||||||||||| | |||||| ||||||||||| | |   ||||| | |||||||||||||||| ||||| ||| ||||    
T  29423400 cccttccagaaccgcaacaccaatttcaaaactctcactattcacttcttcaccaatt---tcaggaaaaggaacctcattgaaaatctcatgtgttagg 29423496  T
Q  393 ttaaa 397  Q
    |||||    
T  29423497 ttaaa 29423501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 410
Target Start/End: Complemental strand, 29467977 - 29467673
Alignment:
Q  103 catgatctccttccaaaagaaccttccttccatcacgagaataacacaagggtctcaaagattccaaaggtaaatccaaacttgatttaaccaaagtaaa 202  Q
    |||| ||| |||| || |||||| | |||||||| |  |||||||  || || ||||||||||||||  |||||   ||||  ||| |||||||||||||    
T  29467977 catggtctacttcaaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaa 29467878  T
Q  203 aagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacacccgcctaaa 302  Q
    |||||||  ||||||||||||| | |||||||||||||||| ||||| |||||  ||| |||||| ||||| |||| |||   |||||||||| || |||    
T  29467877 aagtttacgccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaaa 29467778  T
Q  303 acagcaacacgaatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaaggcga 402  Q
    || ||||||  ||||| |||||| | |  ||||||||| | ||||| |   ||||| |||||||||||||||||| |||||||   ||||||||| ||||    
T  29467777 accgcaacatcaattttaaaactctcaacattaacttcataacctatt---tcaggaagaggaacctcattgaaaatctcaagctttaggttaaacgcga 29467681  T
Q  403 gaattaaa 410  Q
     |||||||    
T  29467680 taattaaa 29467673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 29453578 - 29453503
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| | ||| ||||||| | ||||||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  29453578 catagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc 29453503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 29468054 - 29467979
Alignment:
Q  5 catagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||| |||| |||||||| | |||||||||||||| |||| ||||||||||| | |||||||||||||| ||||    
T  29468054 catagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttc 29467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 29423146 - 29423208
Alignment:
Q  18 aaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    ||||||| | |||||| |||| ||||||||||||||||||| | |||||||||||||||||||    
T  29423146 aaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttc 29423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 29443572 - 29443520
Alignment:
Q  28 ttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 80  Q
    |||||||||||||||||||   ||||||||| | |||||||||||||||||||    
T  29443572 ttccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 29443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 323
Target Start/End: Complemental strand, 41966819 - 41966682
Alignment:
Q  186 gatttaaccaaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 285  Q
    |||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||| |||||| |   |||||| ||||||||||  |||||    
T  41966819 gatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatac 41966720  T
Q  286 aaagacacccgcctaaaacagcaacacgaatttcaaaa 323  Q
    |||||||||| || ||||||| ||||  ||||||||||    
T  41966719 aaagacaccctcccaaaacagaaacagaaatttcaaaa 41966682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 41966975 - 41966911
Alignment:
Q  12 tcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacag 76  Q
    ||||| ||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  41966975 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  194 caaagtaaaaagtttaaaccaactatctctagaaccatattctttcatcacccaaatatcaa 255  Q
    ||||||||| | |||| |||||||||||||| | |||||||||||||||||||||| |||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

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