View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_5 (Length: 414)
Name: NF16778_low_5
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 49423388 - 49423011
Alignment:
| Q |
20 |
acctagatccatgttttttgagggtaaacgttgcatattagtttttctcatctttgtcatttgctatcttttatttttggcacagacgaatggacaaaat |
119 |
Q |
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| T |
49423388 |
acctagatccatgttttttgagggtaaacgttgcatattagtttttctcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaaat |
49423289 |
T |
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| Q |
120 |
taaacaaatatttgatttctaaaaggaatcgagaaatgtgagtcgtcactgggcagttaagtcataaggaatcggtaattatacgaggtagttccctttc |
219 |
Q |
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| T |
49423288 |
taaacaaatatttgatttctaaaaggaatcgagaaatgtgagtcgtcactgggcagttaagtcataaggaatcggtaattatccgaggtagttccctttc |
49423189 |
T |
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| Q |
220 |
aaaattctagtgctccgcgaaatacaggaagatgtatgacttaggattgagtagaagctagtgattaaaatattccctatggcatactgtatagggagcg |
319 |
Q |
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| T |
49423188 |
aaaattctagtgctccgcgaaatgcaggaagatgtatgacttaggattgagtagaagctagtgattaaaatactccctatggcatactgtatagggagcg |
49423089 |
T |
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| Q |
320 |
attaagtgaagcttaagaaaaggctgttcaagaggatgaagggtagaaagttcttctatcaatcaataacctgctgtt |
397 |
Q |
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| T |
49423088 |
attaagtgaagcttaagaaaaggctgttcaagaggaggaagggtagaaagttcttctatcagtcaataacctgctgtt |
49423011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 49425531 - 49425448
Alignment:
| Q |
67 |
tcatctttgtcatttgctatcttttatttttggcacagacgaatggacaaa-attaaacaaatatttgatttctaaaaggaatc |
149 |
Q |
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| T |
49425531 |
tcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagattaaacaaatattttatttctcaaaggaatc |
49425448 |
T |
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