View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16778_low_8 (Length: 336)
Name: NF16778_low_8
Description: NF16778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16778_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 16791341 - 16791184
Alignment:
| Q |
19 |
ttcaaatgattctgtagcgtcaatgaacttatttagaaaccttcacatcttctcgcacaagatgacatgttgattgatcattctgacattttgcttggat |
118 |
Q |
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| T |
16791341 |
ttcaagtgattctgtagcgtcaatgaacttatttagaaaccttcacatcttctcgcacaaaatgacatgt-gattgatcattctgacattttgcttggat |
16791243 |
T |
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| Q |
119 |
cgatgagttgggaccaaaggaaaggaaaatcatcataaaaacatgaagttgccatagac |
177 |
Q |
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| T |
16791242 |
cgatgagttgggaccaaaggaaaggaaaatcatcataaaaacaagaagttgccatagac |
16791184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 16791136 - 16790982
Alignment:
| Q |
176 |
actgacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattaca---attattgatgcattttcatgagcaagatagtgacttgcaat |
272 |
Q |
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| T |
16791136 |
actgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgacttgcaat |
16791037 |
T |
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| Q |
273 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
327 |
Q |
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| T |
16791036 |
tatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
16790982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 326
Target Start/End: Complemental strand, 16793045 - 16792895
Alignment:
| Q |
179 |
gacctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaat---tattgatgcattttcatgagcaagatagtgacttgcaattat |
275 |
Q |
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| T |
16793045 |
gacctttattgttctcgaaggcgaagtcttgccactaaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattat |
16792946 |
T |
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| Q |
276 |
ttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16792945 |
ttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacttttg |
16792895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 16617353 - 16617261
Alignment:
| Q |
234 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16617353 |
tattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttg |
16617261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 16629734 - 16629585
Alignment:
| Q |
180 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
276 |
Q |
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| T |
16629734 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16629635 |
T |
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| Q |
277 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16629634 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttg |
16629585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 16638615 - 16638466
Alignment:
| Q |
180 |
acctttattgttctcgaaggtgaagtcttgccactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatt |
276 |
Q |
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| T |
16638615 |
acctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaatgatt |
16638516 |
T |
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| Q |
277 |
tgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16638515 |
tgttcccacaggatggaaaatgcgtcccgtctttgatccaaccacctttg |
16638466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 15110408 - 15110451
Alignment:
| Q |
282 |
ccacaggatagaaaatgcctcgcagctttgttgcaaccaccttt |
325 |
Q |
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| T |
15110408 |
ccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt |
15110451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 16629369 - 16629277
Alignment:
| Q |
234 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16629369 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttg |
16629277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 16638250 - 16638158
Alignment:
| Q |
234 |
tattgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttg |
326 |
Q |
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| T |
16638250 |
tattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaatatgcgtcgcgtctttgatccaaccgcctttg |
16638158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 38877856 - 38877741
Alignment:
| Q |
211 |
cactaaagtatttaaattacaatt---attgatgcattttcatgagcaagatagtgacttgcaattatttgtttccacaggatagaaaatgcctcgcagc |
307 |
Q |
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||||||||| ||||| ||||| || |||||||||| ||||| |||||||| ||||||| ||| |||| | |||||| || ||||||||||| |||| |
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| T |
38877856 |
cactaaagtgtttaatttacatttgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagc |
38877757 |
T |
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| Q |
308 |
tttgttgcaaccacct |
323 |
Q |
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| T |
38877756 |
tttgttgcaaccacct |
38877741 |
T |
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