View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16779_high_5 (Length: 237)

Name: NF16779_high_5

Description: NF16779

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16779_high_5

[»] chr8 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 119; E-Value: 6e-61

Query Start/End: Original strand, 66 - 220

Target Start/End: Original strand, 36478445 - 36478599

Alignment:

Q	66	caatacaatattgattgttgttttctcaataagactcatgtgtatgtgatgaacttttatcaagtgtaataaaaatgtgtcagagtaattaaattataaa	165	Q
		\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36478445	caatacaacattagttgttgttttctcaataaaactcatgtgtatgtgatgaacttttatcaagtgtaataaaaatgtgtcggtgtaattaaattataaa	36478544	T

Q	166	ttctttttcacatggattgttctaattcttactccgcaatataattaccatgttg	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36478545	ttctttttcacatggactgttctagttcttactccgctatataattaccatgttg	36478599	T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 112 - 154

Target Start/End: Complemental strand, 26391606 - 26391564

Alignment:

Q	112	tgatgaacttttatcaagtgtaataaaaatgtgtcagagtaat	154	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26391606	tgatgaaattttagcaaatgtaataaaaatgtgtcagagtaat	26391564	T

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