View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16779_low_1 (Length: 786)
Name: NF16779_low_1
Description: NF16779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16779_low_1 |
 | |
|
| [»] scaffold0488 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 159 - 768
Target Start/End: Complemental strand, 36770475 - 36769875
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770475 |
ataaagctagaaaaatgcaataaacgaataaagggaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
36770376 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaagcaaagcaac |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770375 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaac------------tgaggatagtaacaggttacattaaaagcaaagcaac |
36770288 |
T |
|
| Q |
359 |
aaagaacaaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttccgat |
458 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
36770287 |
aaagaacaaactagagccaagatcaagccatacacatcatgttttataggcttttgaaatgccactcttagcacgagtgtgaatgcacttatttttcgat |
36770188 |
T |
|
| Q |
459 |
cctctaggactctgcagtttgtttttcttc--ttgtttatttgaaacatatggagtgaatgactcattgagtgaactggttcctcctaaatttgtgcttt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770187 |
cctctaggactctgcagtttgtttttcttcttttgtttatttgaaacatatggagtgaatgactcattgagtgaactggttcctcctaaatttgtgcttt |
36770088 |
T |
|
| Q |
557 |
ttctgctagcagcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgt-ctgtcagaagcatcaatttctacagcaccccagaa |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| | ||||||| || |
|
|
| T |
36770087 |
ttctgctagcagcatatggaaacttggctttattcacttcagtgttagtttctggatcaaccgtgttgtcagaagcatcagtttcttcctcaccccataa |
36769988 |
T |
|
| Q |
656 |
cttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatca |
755 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36769987 |
cttgctcaagactttaccatctcttaaacatgcagctgatttatttttaggaccagcagtaatttgcacctttctcttgtcttgccctaatatctcatca |
36769888 |
T |
|
| Q |
756 |
ttagtggtgatag |
768 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36769887 |
ttagtggtgatag |
36769875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 159 - 768
Target Start/End: Complemental strand, 9747116 - 9746516
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9747116 |
ataaagctagaaaaatgcaataaaagaataaagggaaaagtacaatattggggggactaagccaatacccaaaaagacaatcaagacagaaaagcaaagt |
9747017 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaagcaaagcaac |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9747016 |
cacttcctaagtagccttaaaccacttctaaggagtgatgagatgaaaaac------------tgaggatagtaacaggttacaataaaagcaaagcaac |
9746929 |
T |
|
| Q |
359 |
aaagaacaaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttccgat |
458 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9746928 |
aaagaacaaactaaagccaagatcaagccatacacatcatgatttatatgcttttgaaatgccactcttagcacgagtgtgaatgcacttattttccgat |
9746829 |
T |
|
| Q |
459 |
cctctaggactctgcagtttgtttttcttct--tgtttatttgaaacatatggagtgaatgactcattgagtgaactggttcctcctaaatttgtgcttt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9746828 |
cctctaggactctgcagtttgtttttcttcttctgtttatttgaaacatatggagtgaatgactcattgagtgaactgcttcctcctaaatttgtgcttt |
9746729 |
T |
|
| Q |
557 |
ttctgctagcagcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgt-ctgtcagaagcatcaatttctacagcaccccagaa |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| || ||||||| || |
|
|
| T |
9746728 |
ttctgctagcagcatatggaaacttggctttattcacttcagtgtcagtttctggatcaactgtgctgtcagaagcatcaatttcttcatcaccccataa |
9746629 |
T |
|
| Q |
656 |
cttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatca |
755 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9746628 |
cttgctcaagactttaccatctcccaaacatgcagctgatttatttttaggaccagcagtaatttgcacctttttcttgtcttgccctaatatctcatca |
9746529 |
T |
|
| Q |
756 |
ttagtggtgatag |
768 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9746528 |
ttagtggtgatag |
9746516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 159 - 525
Target Start/End: Original strand, 4570868 - 4571255
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
|||||||||||||| | |||||||| |||| ||| ||||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4570868 |
ataaagctagaaaattacaataaaaaaatagagggaaaagtataaaattggggggactaagccaatacccaattagacaacaaagacagaaaagcaaagt |
4570967 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaa--------aagc |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| ||| |||||| | |||||||| ||||||||||||||| ||| ||| |||| |
|
|
| T |
4570968 |
cacttcctaagtagccttagaccacttctaaggaaggataaaatggaaaacaaagtctgctactaaggatagtaacaggtgacaataagaagacacaagc |
4571067 |
T |
|
| Q |
351 |
----------aaagcaacaaagaa-caaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtg |
439 |
Q |
| |
|
||||||||| |||| ||| ||| |||||| | |||| |||||||||||||||||||||||||| || |||||||||||||| || || || |
|
|
| T |
4571068 |
acaaagaattaaagcaacagagaatcaatctaaagcctaaaccaaggcatacacatcatgatttataagctttagatatgccactcttagcgcgagtttg |
4571167 |
T |
|
| Q |
440 |
aatgcacttattttccgatcctctaggactctgcagtttgtttttcttct--tgtttatttgaaacatatggagtgaatgactcattg |
525 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||| || |||| |||| |
|
|
| T |
4571168 |
aatgcactcatttttcgattctctaggactctgcaatttgttttttttcttctgtctatttgaaacatatggagtaaaggacttattg |
4571255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 670 - 768
Target Start/End: Complemental strand, 31320074 - 31319976
Alignment:
| Q |
670 |
taccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatcattagtggtgatag |
768 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| |||||||| | |||||||| |||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
31320074 |
taccatctttcaaacatgcagcagaaagatttttagggccaacagtgaaaagcacctttttcttatcttgtcctaatatctcatcatgagtggtgatag |
31319976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 768
Target Start/End: Complemental strand, 35318923 - 35318810
Alignment:
| Q |
655 |
acttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatc |
754 |
Q |
| |
|
|||| ||||| | |||||||||| ||||||| ||||| || ||| ||||||||| ||| | || |||||||| || ||| ||||||| |||||||| |
|
|
| T |
35318923 |
acttactcaatattttaccatctttcaaacaggcagcagacaaattcttaggaccagaagtgaagtgaacctttcttttatctggccctaaaatctcatc |
35318824 |
T |
|
| Q |
755 |
attagtggtgatag |
768 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
35318823 |
attagtagtgatag |
35318810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 9e-97; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 159 - 462
Target Start/End: Complemental strand, 11776440 - 11776126
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||| || |
|
|
| T |
11776440 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaaaattggggggactaagccaatacccaattagacaatagagacagtaaagcagaga |
11776341 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaa---------- |
348 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
11776340 |
cacttcctaagtagccttaaatcacttctaaggtgggataagatggaaaacacaccctgctactgagggtggtaacaagttacattaaaatgacacaaac |
11776241 |
T |
|
| Q |
349 |
gcaaagcaacaaag-aacaaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcact |
447 |
Q |
| |
|
||||| ||||||| ||||||||| |||||| | |||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
11776240 |
acaaagaaacaaagcaacaaactaaagcctaaaccaagacatacacatcatgatttataagctttagatatgccactcttagcacgggtttgaatgcact |
11776141 |
T |
|
| Q |
448 |
tattttccgatcctc |
462 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11776140 |
cattttccgatcctc |
11776126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 159 - 457
Target Start/End: Complemental strand, 9743318 - 9743008
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattgggggg-actaagccaatacccaaatagacaatcaaga---cagaaaagca |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||| | ||||| || | ||| |||||| |
|
|
| T |
9743318 |
ataaagctagaaaaattcaataaaagaaaaaagggaacagtacaaaattgggggggactaagccaatacccaattcgacaaaaaaaagaacagtaaagca |
9743219 |
T |
|
| Q |
255 |
aagtcacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaa-------a |
347 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | | ||| || | |
|
|
| T |
9743218 |
aagtcacttccttagtaaccttaaaccacttctaaggaggcataagatgaaaaacacaccctgctactgaggttacattgaaatgacacaaacacaaaga |
9743119 |
T |
|
| Q |
348 |
agcaaagcaacaaagaac-aaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcac |
446 |
Q |
| |
|
|||||||||| | ||||| |||| | |||||| | ||| ||||||||||||| |||||| |||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
9743118 |
agcaaagcaatagagaacaaaacgaaagcctaaaccaatgcatacacatcatgttttatatactttagatatgccactcttagcacgggtttgaatgcac |
9743019 |
T |
|
| Q |
447 |
ttattttccga |
457 |
Q |
| |
|
| ||||||||| |
|
|
| T |
9743018 |
tcattttccga |
9743008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 567 - 766
Target Start/End: Complemental strand, 11776037 - 11775837
Alignment:
| Q |
567 |
agcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgtc-tgtcagaagcatcaatttctacagcaccccagaacttgctcaag |
665 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||||||||| ||| ||||| ||||||| | ||| || | ||||||||| |||||||| |
|
|
| T |
11776037 |
agcatatggagacttggctttattcacttcagaatcagtttctgggtcaattgtgatgtcaatagcatcagtgtcttcatctccccagaacctgctcaag |
11775938 |
T |
|
| Q |
666 |
actttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatcattagtggtga |
765 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||| ||||| |||||||| || |||||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
11775937 |
gctttaccatctttcatacaggcaactgatatatttataggaccatcaataatttgcacctttctcttgtcttgccccaaaatctcatcataagtggtga |
11775838 |
T |
|
| Q |
766 |
t |
766 |
Q |
| |
|
| |
|
|
| T |
11775837 |
t |
11775837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 28091709 - 28091616
Alignment:
| Q |
387 |
catacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttccgatcctctaggactctgcagtttgt |
480 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
28091709 |
catacacatcatgatttataagctttagatatgccactcttagcactggtgtgaatgcactcatttttcgatcctttaggactctgcagattgt |
28091616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 159 - 349
Target Start/End: Complemental strand, 28091961 - 28091778
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||| ||||||| | || | |||||||||| |
|
|
| T |
28091961 |
ataaagctagaaaaatgcaataaaag-------ggaaaagtacaatattggggg-actaagccaaagcccaattagacaaaaaggataataaagcaaagt |
28091870 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggaggga-taagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaag |
349 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || || || | |||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
28091869 |
cacttcctaagtagccataacccacttctaaagaatgacaaacaggaaaaacacaccctgctactaagggtaataacaggttacattaaaag |
28091778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 13529004 - 13528875
Alignment:
| Q |
169 |
aaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagac----agaaaagcaaagtcacttc |
264 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||| | ||||| | |||||| | |||||| |
|
|
| T |
13529004 |
aaaaacgcaataaaagaataaagggaaaagtacaatattgaagggactaagccaatacccaattaaacagtaaagaccaaaaataaagcattgccacttc |
13528905 |
T |
|
| Q |
265 |
ctaagtagccttaaaccacttctaaggagg |
294 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
13528904 |
ctaagtagcctaaaaccacttctaaggagg |
13528875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 13481603 - 13481658
Alignment:
| Q |
169 |
aaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
13481603 |
aaaaatgcaataaaagaataaagggaaaagtacaatattggggtgactaagccaat |
13481658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 394 - 520
Target Start/End: Complemental strand, 13528735 - 13528608
Alignment:
| Q |
394 |
atcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttccgatcctctaggactctgcagtttgtttttcttct--tg |
491 |
Q |
| |
|
||||||||||||||||||| || | ||||| |||||| |||| | |||||||| ||||| |||||||||||||||||| | | |||||||||| || |
|
|
| T |
13528735 |
atcatgatttataagctttagataatccactattagcatgggtttaaatgcactcatttt-ttatcctctaggactctgcaatctatttttcttctgctg |
13528637 |
T |
|
| Q |
492 |
tttatttgaaacatatggagtgaatgact |
520 |
Q |
| |
|
| ||||||||||||||||||| ||||||| |
|
|
| T |
13528636 |
tctatttgaaacatatggagtaaatgact |
13528608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 420 - 520
Target Start/End: Original strand, 13481838 - 13481940
Alignment:
| Q |
420 |
ccactcttagcacgggtgtgaatgcacttattttccgatcctctaggactctgcagtttgtttttcttct--tgtttatttgaaacatatggagtgaatg |
517 |
Q |
| |
|
||||| ||| || |||| |||||||||| ||||| ||||||| |||||||||||| | | |||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
13481838 |
ccactattaacaagggtttgaatgcactaatttttcgatcctttaggactctgcaatctatttttcttctgctgtctatttgaaacatatggagtaaatg |
13481937 |
T |
|
| Q |
518 |
act |
520 |
Q |
| |
|
||| |
|
|
| T |
13481938 |
act |
13481940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 3e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 159 - 462
Target Start/End: Complemental strand, 33471975 - 33471670
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| |||||||| |||||| |||||| || |
|
|
| T |
33471975 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtataaaattggggg-actaagccaatactcaattagacaatagagacagtaaagcagaga |
33471877 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaagcaaagcaac |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| | | ||| |
|
|
| T |
33471876 |
cacttcctaagtagccttaaatcacttctaaggtgggataagatggaaaacacaccctgctattgaggatagtaacaagttacattaaaataacacaaac |
33471777 |
T |
|
| Q |
359 |
aaag---aacaaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttcc |
455 |
Q |
| |
|
| || ||||||||| |||||| | |||| |||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
33471776 |
acagagcaacaaactaaagcctaaaccaaggcatacacatcatgatttataagctttagatatgtcactcttagcacgggtttgaatgcactcattttcc |
33471677 |
T |
|
| Q |
456 |
gatcctc |
462 |
Q |
| |
|
||||||| |
|
|
| T |
33471676 |
gatcctc |
33471670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 159 - 525
Target Start/End: Complemental strand, 44775927 - 44775541
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattgggggg-actaagccaatacccaaatagacaatcaagacagaaaagcaaag |
257 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| ||| | |||||||||| |
|
|
| T |
44775927 |
ataaagcta-aaaaatgcaataaaagaataaagggaaaagtacaatattgggggggactaagccaatactcaattagacaacaaagtgaaaaaagcaaag |
44775829 |
T |
|
| Q |
258 |
tcacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacatt------------- |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
44775828 |
tcacttccaaagtagccttaaaccacttc-aaggaaggataaaatggaaaacacactctgctactaaggatagtaacaggttacattaggatgacacaaa |
44775730 |
T |
|
| Q |
345 |
-----aaaagcaaagcaacaaagaac-aaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgt |
438 |
Q |
| |
|
| ||||||||||||| ||||| |||||| |||||| | |||| ||||||||||||||||||||||| || || ||| || ||||||||||||| | |
|
|
| T |
44775729 |
caccaagaagcaaagcaacatagaacaaaactaaagcctaaaccaaggcatacacatcatgatttataagccttagatatgtcattcttagcacgggttt |
44775630 |
T |
|
| Q |
439 |
gaatgcacttattttccgatcctctaggactctgcagtttgtttttcttct--tgtttatttgaaacatatggagtgaatgactcattg |
525 |
Q |
| |
|
||||||| | | |||| |||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
44775629 |
gaatgcaatcaatttctgatcctctaggactttgcaatttgttttttttcttctgtctatttgaaacatatggagtaaatgacttattg |
44775541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 567 - 739
Target Start/End: Complemental strand, 33471581 - 33471408
Alignment:
| Q |
567 |
agcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgtc-tgtcagaagcatcaatttctacagcaccccagaacttgctcaag |
665 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| | ||||||| |||||| | | |||||| ||||||| | ||| || | ||||||||| |||||||| |
|
|
| T |
33471581 |
agcatctggaaacttgactttattcacttcagaatcagtttctaggtcaattatgatgtcagtagcatcagtgtcttcatctccccagaacctgctcaag |
33471482 |
T |
|
| Q |
666 |
actttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttg |
739 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
33471481 |
gctttaccatctttcatacaggcaactgatttatttatagggccatcagtaatttgcacctttctcttgtcttg |
33471408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 39318029 - 39317959
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
39318029 |
ataaagctagaaaaatgcaataaaagaa-aaagggaaaagtataatattggggggactaggccaaaacccaa |
39317959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 757
Target Start/End: Original strand, 6631510 - 6631619
Alignment:
| Q |
648 |
ccccagaacttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaata |
747 |
Q |
| |
|
||||| ||||| ||||| || || |||||| ||||||||||||| || |||||||| |||||||| | |||| |||| ||||||||||| |||| | |
|
|
| T |
6631510 |
ccccaaaactttctcaaaaccttgccatctttcaaacatgcagcaatcttgtttttagggccaacagtgagttgcgccttcctcttgtcttggcctagaa |
6631609 |
T |
|
| Q |
748 |
tctcatcatt |
757 |
Q |
| |
|
| |||||||| |
|
|
| T |
6631610 |
tttcatcatt |
6631619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 159 - 462
Target Start/End: Complemental strand, 9264837 - 9264523
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagacagaaaagcaaagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||| ||||| || |
|
|
| T |
9264837 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaaaattggggggactaagccaatatccaattagacaatagagacagtaaagctgaga |
9264738 |
T |
|
| Q |
259 |
cacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaaaa---------- |
348 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
9264737 |
cacttcctaagtagccttaaatcactcctaaggtgggataagatggaaaacacaccctgctactgagggtagtaacaagttacattaaaatgacacaaac |
9264638 |
T |
|
| Q |
349 |
gcaaagcaacaaag-aacaaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcact |
447 |
Q |
| |
|
||||| ||||||| ||||||||| || ||| | |||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
9264637 |
acaaagaaacaaagcaacaaactaaagtctaaaccaaggcatacacatcatgatttataagctttagatatgccactcttagcacgggtttgaatgcact |
9264538 |
T |
|
| Q |
448 |
tattttccgatcctc |
462 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9264537 |
cattttccgatcctc |
9264523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 12484294 - 12484163
Alignment:
| Q |
11 |
tgagatgaagaaaatgttgggtgaagttgattgcattcctctattgatcaaaatgcttgaggctaaagcaaacactgctagagaacttgcagcacaagta |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12484294 |
tgagatgaagaaaatgttaggtgaagttggttgcattcctctattgatcaacatgcttgaggctaaagcaaacactgctagagaacttgcagcacaagca |
12484195 |
T |
|
| Q |
111 |
attgcaagcttaatgattttgtcgcaaaatcg |
142 |
Q |
| |
|
||||| || || ||||||||||| || ||||| |
|
|
| T |
12484194 |
attgccagtttgatgattttgtctcagaatcg |
12484163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 567 - 766
Target Start/End: Complemental strand, 9264434 - 9264234
Alignment:
| Q |
567 |
agcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgtct-gtcagaagcatcaatttctacagcaccccagaacttgctcaag |
665 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||||||||| ||| | |||| ||||||| | ||| || | ||||||||| |||||||| |
|
|
| T |
9264434 |
agcatatggagacttggctttattcacttcagaatcagtttctgggtcaattgtgttgtcaatagcatcagtgtcttcatctccccagaacctgctcaag |
9264335 |
T |
|
| Q |
666 |
actttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatcattagtggtga |
765 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||||||||| |||||||| || |||||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
9264334 |
gctttaccatctttcatacaggcaactgatttatttataggaccatcattaatttgcacctttctcttgtcttgccccaaaatctcatcataagtggtga |
9264235 |
T |
|
| Q |
766 |
t |
766 |
Q |
| |
|
| |
|
|
| T |
9264234 |
t |
9264234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 159 - 465
Target Start/End: Complemental strand, 24623217 - 24622902
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggac-taagccaatacccaaatagacaatcaagacagaaaagcaaag |
257 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| || |||| || ||||||||||| |||||||| |||||| ||||||| ||||||| ||||||||| |
|
|
| T |
24623217 |
ataaagctagaaaagttcaataaaagaaaaaagggaacagtataaaattggggggacctaagccaaaacccaattagacaaaaaagacagtaaagcaaag |
24623118 |
T |
|
| Q |
258 |
tcacttcctaagtagccttaaaccacttctaaggagggataagatgaaaaacacaccctgctactgaggatagtaacaggttacattaa-------aagc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||| || | | ||| || |||| |
|
|
| T |
24623117 |
tcacttcctaagtagccttaaaccacttctaagaaggcataagatgaaaaacactccttgctactgaggttacattgaaatgacacaaacacaaagaagc |
24623018 |
T |
|
| Q |
351 |
aaagcaacaaagaac-aaactagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcactta |
449 |
Q |
| |
|
||||||||| ||||| |||||| |||||| | |||| ||||||||||||| |||||||||||| || |||||||||||||||||||| |||||||||| | |
|
|
| T |
24623017 |
aaagcaacagagaacaaaactaaagcctaaaccaaggcatacacatcatgttttataagctttagatatgccactcttagcacgggtttgaatgcactca |
24622918 |
T |
|
| Q |
450 |
ttttccgatcctctag |
465 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24622917 |
ttttccgatcctctag |
24622902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 21734994 - 21735063
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaa |
230 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
21734994 |
ataaagctagaaaa-tgcattaaaagaataaaggaaaa-gtacaaaattggggggactaagccaatacccaa |
21735063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 8034489 - 8034370
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatatt-ggggggactaagccaatacccaaatagacaatcaaga-caga---aaagc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |||||| || ||| |||| |||| ||||| |
|
|
| T |
8034489 |
ataaagctagaaaaatgcaataaaagaa-aaagg-aaaagtacaatattgggggggactaggccaaaacccaattaaacataaaagaccagatgtaaagc |
8034392 |
T |
|
| Q |
254 |
aaagtcacttcctaagtagcct |
275 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8034391 |
taagtcacttcctaagtagcct |
8034370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 754
Target Start/End: Complemental strand, 18187572 - 18187475
Alignment:
| Q |
657 |
ttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatc |
754 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || | |||||||| |||||||||| |||||| || ||||||||| | || || |||||||| |
|
|
| T |
18187572 |
ttgctcaaagctttaccatctttcaaacatgcagcagacatgtttttagggccaacagtaaattgcactttcctcttgtctggtcccaaaatctcatc |
18187475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 45119398 - 45119442
Alignment:
| Q |
401 |
tttataagcttttgaaatgccactcttagcacgggtgtgaatgca |
445 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
45119398 |
tttataggctttggaaattccactcttagcacgggtgtgaatgca |
45119442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 706560 - 706480
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
706560 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaattagacaat |
706480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 657 - 760
Target Start/End: Original strand, 25863026 - 25863129
Alignment:
| Q |
657 |
ttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatcat |
756 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || | |||||||| |||||||||| |||||| || ||||||||| | || || ||||||||| |
|
|
| T |
25863026 |
ttgctcaaagctttaccatctttcaaacatgcagcagacatgtttttagggccaacagtaaattgcactttcctcttgtctggtcccaaaatctcatcag |
25863125 |
T |
|
| Q |
757 |
tagt |
760 |
Q |
| |
|
|||| |
|
|
| T |
25863126 |
tagt |
25863129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 760
Target Start/End: Original strand, 32929225 - 32929330
Alignment:
| Q |
655 |
acttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatc |
754 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||| ||||| || ||| ||||| ||| |||| | || | ||||||| |||||| |||||| |||||||| |
|
|
| T |
32929225 |
acttactcaagattttaccatctttcaaacaggcagcagacaaattcttagggccagcagtgaagtgaaactttctcctgtctttccctaacatctcatc |
32929324 |
T |
|
| Q |
755 |
attagt |
760 |
Q |
| |
|
|||||| |
|
|
| T |
32929325 |
attagt |
32929330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 350 - 480
Target Start/End: Original strand, 5180204 - 5180335
Alignment:
| Q |
350 |
caaagcaacaaagaacaaac-tagagcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcactt |
448 |
Q |
| |
|
||||| |||| ||||||||| || |||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
5180204 |
caaagaaacatagaacaaacctaaagcctaaatcaatgcatacaaatcatgatttataagctttaaatatgccactcttagcacgggtgtgaatgcactc |
5180303 |
T |
|
| Q |
449 |
attttccgatcctctaggactctgcagtttgt |
480 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| |
|
|
| T |
5180304 |
attttccgatcttttaggactctgcagattgt |
5180335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 5180119 - 5180193
Alignment:
| Q |
161 |
aaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagac |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
5180119 |
aaagctagaaaattgcaataaaagaataaagggaaaagtacaatatt-gggggactaagccaaaacccaattagac |
5180193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 40559919 - 40560026
Alignment:
| Q |
41 |
ttgcattcctctattgatcaaaatgcttgaggctaaagcaaacactgctagagaacttgcagcacaagtaattgcaagcttaatgattttgtcgcaaaat |
140 |
Q |
| |
|
|||||| |||||| | ||||| ||||||||| ||||||||||| || ||| |||||||||| |||| ||| ||||||||||||||||||||||| ||| |
|
|
| T |
40559919 |
ttgcatccctctacttatcaacatgcttgagtctaaagcaaacggtgaaagaaaacttgcagctcaagcaatcgcaagcttaatgattttgtcgcagaat |
40560018 |
T |
|
| Q |
141 |
cgaagaga |
148 |
Q |
| |
|
|| ||||| |
|
|
| T |
40560019 |
cggagaga |
40560026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 38140368 - 38140299
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaa |
230 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
38140368 |
ataaagctagaggaatgcaataaaagaa--aaggaagaagtacaagattggggggactaggccaatacccaa |
38140299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 373 - 462
Target Start/End: Original strand, 17350694 - 17350783
Alignment:
| Q |
373 |
agcctagatcaagccatacacatcatgatttataagcttttgaaatgccactcttagcacgggtgtgaatgcacttattttccgatcctc |
462 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
17350694 |
agcctaaaccaaggcatacacatcatgatttataagctttagatatgtcactcttagcacgggtttgaatgcactcattttctgatcctc |
17350783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 563 - 662
Target Start/End: Original strand, 17350868 - 17350968
Alignment:
| Q |
563 |
tagcagcatatggaaacttggctttattcacttcagtgttagtttctgggtcaactgt-ctgtcagaagcatcaatttctacagcaccccagaacttgct |
661 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||| |||||| |||||||| ||| || | ||||||||| |||| |
|
|
| T |
17350868 |
tagcagcatctggaaacttggctttattcacttcagagtcagtttttgggtcaattgtgctgtcattagcatcaaagtcttcatctccccagaacctgct |
17350967 |
T |
|
| Q |
662 |
c |
662 |
Q |
| |
|
| |
|
|
| T |
17350968 |
c |
17350968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 757
Target Start/End: Original strand, 7906152 - 7906254
Alignment:
| Q |
655 |
acttgctcaagactttaccatctctcaaacatgcagctgatttatttttaggaccaacagtaatttgcacctttctcttgtcttgccctaatatctcatc |
754 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||| | ||| | ||||||||| |||||||| | ||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
7906152 |
acttactcaagattttaccatctttcaaacaggtagcagtcagatttttagggccaacagtgaattgcacctttctcttatcttggcctaaaatctcatc |
7906251 |
T |
|
| Q |
755 |
att |
757 |
Q |
| |
|
||| |
|
|
| T |
7906252 |
att |
7906254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 21574420 - 21574540
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaaga-caga---aaagca |
254 |
Q |
| |
|
|||||| || ||||||||||||| ||| ||||| ||||||||||||||||| ||||| ||||| |||||| || || | |||| |||| |||||| |
|
|
| T |
21574420 |
ataaagttaaaaaaatgcaataatagagaaaaggggaaagtacaatattggggagactaggccaaaacccaattaaactaaaaagaccagatgtaaagca |
21574519 |
T |
|
| Q |
255 |
aagtcacttcctaagtagcct |
275 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
21574520 |
aagtcacatcctaagtagcct |
21574540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0488
Description:
Target: scaffold0488; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 4805 - 4687
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagac----agaaaagca |
254 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||||||| ||| |||||||||||||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
4805 |
ataaagctagaaaaatgcatttaaagaataaagg-aaaagtacaaaatt-gggggactaagccaatacccaattaaacataaaagaccaaaagaaaagca |
4708 |
T |
|
| Q |
255 |
aagtcacttcctaagtagcct |
275 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
4707 |
aagacacttcctaagtagcct |
4687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 12043 - 11924
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagac----agaaaagca |
254 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||| |||||||||| ||| || ||| ||||| ||||||||| |
|
|
| T |
12043 |
ataaagctagaaaaatgcattaaaagaataaagg-aaaagtacaaaattgaggggacgaagccaatactcaattaaacataaaagaccataagaaaagca |
11945 |
T |
|
| Q |
255 |
aagtcacttcctaagtagcct |
275 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
11944 |
aagacacttcctaagtagcct |
11924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 68548 - 68440
Alignment:
| Q |
170 |
aaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagac----agaaaagcaaagtcacttcc |
265 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||| ||||| |||||||||||| ||||||| |
|
|
| T |
68548 |
aaaatgcattaaaagaataaaggaaaa-gtacaaaattggggggactaagccaatacccaattaaacataaaagaccataagaaaagcaaagacacttcc |
68450 |
T |
|
| Q |
266 |
taagtagcct |
275 |
Q |
| |
|
||||||||| |
|
|
| T |
68449 |
gaagtagcct |
68440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 31226 - 31107
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaagac----agaaaagca |
254 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| |||||||||| |||||||||| |||| |||||||||| || ||| ||||| ||||||||| |
|
|
| T |
31226 |
ataaagctagaaaaatgcattagaagaaaaaagg-aaaagtacaaaattggggggattaaggcaatacccaattaaacataaaagaccataagaaaagca |
31128 |
T |
|
| Q |
255 |
aagtcacttcctaagtagcct |
275 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
31127 |
aagacacttcctaaatagcct |
31107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 8712 - 8828
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaaatagacaatcaaga-caga---aaagca |
254 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| ||||| |||||| || |||| |||| |||| |||||| |
|
|
| T |
8712 |
ataaagctaaaaaaatgcaataaaagagaaaagtgaaaagtacaatatt-gggggactaggccaaaacccaattaaacaa-aaagaccagatgtaaagca |
8809 |
T |
|
| Q |
255 |
aagtcacttcctaagtagc |
273 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8810 |
aagtcacttcctaagtagc |
8828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0478 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 5023 - 5092
Alignment:
| Q |
159 |
ataaagctagaaaaatgcaataaaagaataaaggaaaaagtacaatattggggggactaagccaatacccaa |
230 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
5023 |
ataaagctagaaaaatgcaataaaataa-aaaggaaaaagtacaatatt-aggggactaggccaaaacccaa |
5092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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