View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16779_low_2 (Length: 770)
Name: NF16779_low_2
Description: NF16779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16779_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 761
Target Start/End: Complemental strand, 7753952 - 7753201
Alignment:
| Q |
16 |
ataattgcaatcaaataacagcataaacatgggttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatca |
115 |
Q |
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| T |
7753952 |
ataattgcaatcaaataacagcataaacatgggttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatca |
7753853 |
T |
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| Q |
116 |
ccaagatggttggtatggctcgcttgcatttactaaacaaattttctacttttcatctctttatggtttacatgtccgatctagaaaaggaagaaacgaa |
215 |
Q |
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| T |
7753852 |
ccaagatggttggtatggcttgcttgcatttactaaacaaattttctacttttcatctctttatggtttacatgtccgatctagaaaaggaagaaacgaa |
7753753 |
T |
|
| Q |
216 |
acaccaacacattagattgaaggggtgtccaacacgtgttagtatttgacaccaacaccacactaacatacatggttacatttaattattacattttcac |
315 |
Q |
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| T |
7753752 |
acaccaacacat-atattgaaggggtgtccaacacgtgttagtatttgacaccaacaccagactaacatacatggttacatttaattattacattttcac |
7753654 |
T |
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| Q |
316 |
aaatgtagacgtgtatttctcggtgtttttgaaaaaataatgataaaggaggatgtgatattttactcttcgtagtttactctctttatgcttttaatgt |
415 |
Q |
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| T |
7753653 |
aaatgtagacgtgtatttctcggtgtttttgaaaaaataatgataaaggaggatgtgatattttactctttgtagtttactctctttatgcttttaatgt |
7753554 |
T |
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| Q |
416 |
ttttcataccttccttggttggtgggaaattgggaaattaggccaagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttga |
515 |
Q |
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| T |
7753553 |
ttttcataccttccttggttggtgggaaactgggaaattaggccaagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttga |
7753454 |
T |
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| Q |
516 |
taatgatatatcacttgaagtacatgaaattaaggta---------------tgagttaatgaaaacagaagattcaacatatacacaaggtgcaagtta |
600 |
Q |
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| T |
7753453 |
tactgatatatctcttgaagtacatgaaattaaggtatttagctcatagttctgagttaatgaaaacagaagattcaatatatacacaaggtgcaagtta |
7753354 |
T |
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| Q |
601 |
taatcannnnnnnnnnnnnnnnnngtagaaatcggtggaatcaatgggaaaaggtgttaccatccagtttgctgatcttaagatgaaaaaatattggttt |
700 |
Q |
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| T |
7753353 |
taatca-------tttttttttttgtagaaatctgtggaatcaatgggaaaaggtgttacaatccagtttgcagatcttaagatgaaaaaatattggttt |
7753261 |
T |
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| Q |
701 |
cctttaatggtaagataaaaaattcc-tttttggttccaaatatgtactcttcttctcactc |
761 |
Q |
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| T |
7753260 |
cctttaatggtatgct--aaatttccttttttggttccaaatatgtattcttcttctcactc |
7753201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 32929242 - 32929326
Alignment:
| Q |
49 |
ttgttctatttcaggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatgg |
133 |
Q |
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| T |
32929242 |
ttgttctattacaggaattttgccttgtacagtattaatacccggattgtttttcataccagaatctcctagatggttggtatgg |
32929326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 32936975 - 32937047
Alignment:
| Q |
60 |
caggaattttaccatgtacaatattaatacctggattatttttcataccagaatcaccaagatggttggtatg |
132 |
Q |
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| T |
32936975 |
caggaattttaccatgtgcaatattaatacccgggttgtacttcattccagaatcacctagatggttggtatg |
32937047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 553
Target Start/End: Original strand, 32929475 - 32929574
Alignment:
| Q |
454 |
taggccaagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttgataatgatatatcacttgaagtacatgaaattaaggtat |
553 |
Q |
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| T |
32929475 |
taggccaagatggggatgatggaggagtttgagacttcattgcaagtgttaaggggattcgacacagatatatctgttgaagtacatgaaattaaggtat |
32929574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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