View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16779_low_3 (Length: 767)
Name: NF16779_low_3
Description: NF16779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16779_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 750
Target Start/End: Original strand, 8921032 - 8921810
Alignment:
| Q |
1 |
ctccgtttctttataactatagcttttatataannnnnnngtttctaattaactgtcacattcaaagtgact-----gatgagtattttgcaagaaccct |
95 |
Q |
| |
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||||||| |||||||||| | ||||||| |||| ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |
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| T |
8921032 |
ctccgttcctttataactgtcgcttttacataatttttttgtttctaattaactgtcactttcaaagtgaatcagtggatgagtattttgcaagaaccct |
8921131 |
T |
|
| Q |
96 |
agcaattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtgg |
195 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921132 |
agcaattgcaaacaagatgtatgcacatggagaaagaaaggaaaaaaaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtgg |
8921231 |
T |
|
| Q |
196 |
tttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaa |
295 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
8921232 |
tttgctccatagaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaagaa |
8921331 |
T |
|
| Q |
296 |
aaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcatggtagaggaagaaatggagc------- |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8921332 |
aaaggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggttttactcatggtagaggaagaaatggagcaagtgga |
8921431 |
T |
|
| Q |
389 |
-----aaggggaaggggaagaggaagacaaagcaaagagatggtggaatactataagtgt------------cactatcaaaatgagtgtcctatttggg |
471 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||| |
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| T |
8921432 |
aggggaaggggaaggggaagatgaagacaaagcaaagagatggtggaatactataagtgtcacaagttgggacactatcaaaataagtgtcccacttggg |
8921531 |
T |
|
| Q |
472 |
aagaaaatactaacaccggtgcaaaagatgaggtgtggttcttagattcaagatgcaacaatcatatgatagccaataaggaatggttgtttaattttaa |
571 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8921532 |
aagaaaatgctaacaccggtgcaaaagatgaggtgtggttcttagatttaggatgcaacaatcatatgatagccaataaggaatggttgtttaattttga |
8921631 |
T |
|
| Q |
572 |
tgagcaattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagagaaaatttgaagttgtgcataggtggaatgatacaggt |
671 |
Q |
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| T |
8921632 |
tgagcaattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagaggaaatttgaagttgtgcataggtggaatgatacaggt |
8921731 |
T |
|
| Q |
672 |
gatcaccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttact |
750 |
Q |
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| T |
8921732 |
gatcaccgatgtgtattatttttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttact |
8921810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7627735 - 7627363
Alignment:
| Q |
1 |
ctccgtttctttataactatagcttttatataannnnnnn-gtttctaattaactgtcacattcaaagtgactgatgagtattttgcaagaaccctagca |
99 |
Q |
| |
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||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7627735 |
ctccgtttctttataactataacttttacataaatttttttgtttctaattaactgtcactttcaaagtgactgatgagtattttgcaagaaccctagca |
7627636 |
T |
|
| Q |
100 |
attgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtttg |
199 |
Q |
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| T |
7627635 |
attgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtttg |
7627536 |
T |
|
| Q |
200 |
ctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaag |
299 |
Q |
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| T |
7627535 |
ctccatagaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttcacaagaaaaag |
7627436 |
T |
|
| Q |
300 |
gaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcatggta |
372 |
Q |
| |
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| T |
7627435 |
gaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggttttactcatggta |
7627363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 389 - 750
Target Start/End: Complemental strand, 7622157 - 7621784
Alignment:
| Q |
389 |
aaggggaaggggaagaggaagacaaagcaaagagatggtggaatactataagtgtcac------------tatcaaaatgagtgtcctatttgggaagaa |
476 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
7622157 |
aaggggaaggggaagaggaagacaaagaaaagagatggtggagtactataagtgtcacaagttgggacactatcaaaatgggtgtcctacttgggaagaa |
7622058 |
T |
|
| Q |
477 |
aatactaacaccggtgcaaaagatgaggtgtggttcttagattcaagatgcaacaatcatatgatagccaataaggaatggttgtttaattttaatgagc |
576 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7622057 |
aatgctaacaccggtgcaaaagataaggtgtggttcttagattcaggatgcaacaatcatatgatagccaataaggaatggttgtttaattttgatgagc |
7621958 |
T |
|
| Q |
577 |
aattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagagaaaatttgaagttgtgcataggtggaatgatacaggtgatca |
676 |
Q |
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| T |
7621957 |
aattttcgtgaatcaattaagcttagtgatgattcaaagttgtcagtcatgagaagaggaaatttgaagttgtgcataggtggaatgatacaggtgatca |
7621858 |
T |
|
| Q |
677 |
ccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttact |
750 |
Q |
| |
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|||||||||||||| || || |||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7621857 |
ccgatgtgtattatatttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttact |
7621784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 153 - 282
Target Start/End: Complemental strand, 35372221 - 35372092
Alignment:
| Q |
153 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttaccactttttccattaatgaactgcaaa |
252 |
Q |
| |
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||||||||| |||| |||||||| |||||||||||||||||||| || | ||||||||||| ||||| ||||||||| |||| ||| ||||||||||| |
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| T |
35372221 |
gagaagatttttagatccatgacatcaagattcaactatgtggtgtgtactatagaagaatctaatgatgttaccactctttctattgatgaactgcaat |
35372122 |
T |
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| Q |
253 |
gcaattttcttgtccaagaagcaagaatga |
282 |
Q |
| |
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||| || ||||| |||||||||||||||| |
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| T |
35372121 |
gcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 24659113 - 24659053
Alignment:
| Q |
153 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctccatagaagaat |
213 |
Q |
| |
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||||||||||| | |||||||| |||||||||||||||||||| | ||| |||||||||| |
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| T |
24659113 |
gagaagattctcatatccatgacatcaagattcaactatgtggtctactctatagaagaat |
24659053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 10784361 - 10784303
Alignment:
| Q |
168 |
tccatgacttcaagattcaactatgtggtttgctccatagaagaatccaatgacgttac |
226 |
Q |
| |
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|||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| ||||| |
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|
| T |
10784361 |
tccatgacatcaagattcaattatgttgtttgctcaattgaagaatcaaatgatgttac |
10784303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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