View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16779_low_6 (Length: 228)

Name: NF16779_low_6
Description: NF16779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16779_low_6
NF16779_low_6
[»] chr3 (2 HSPs)
chr3 (126-213)||(798211-798298)
chr3 (1-68)||(798356-798427)
[»] chr1 (1 HSPs)
chr1 (145-191)||(14527408-14527454)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 798298 - 798211
Alignment:
Q  126 ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgaggcaaaacactagaaagtcagatgctttaattg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  798298 ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgtggcaaaacaccagaaagtcagatgctttaattg 798211  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 798427 - 798356
Alignment:
Q  1 tatatatttgtctctattttgtaaattttgctaggcaagcctaagtc----atctagcgagccaaacttaac 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  798427 tatatatttgtctctattttgtaaattttgctaggcaagcctaagtcatcgatctagcgagccaaacttaac 798356  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 14527408 - 14527454
Alignment:
Q  145 attgttggtatagttgtttgactactgtttacacgaggcaaaacact 191  Q
    ||||||||||||||||||||| |||||| || |||| ||||||||||    
T  14527408 attgttggtatagttgtttgattactgtgtatacgatgcaaaacact 14527454  T

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